Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0251
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978... 34 0.099
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 29 2.1
08_01_0287 - 2325991-2326566 28 4.9
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304... 28 4.9
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251... 28 4.9
01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701 28 4.9
11_06_0128 - 20389375-20389781,20389988-20392787 28 6.5
09_02_0085 + 4111333-4111492,4114766-4116044,4116113-4116206,411... 28 6.5
02_05_0871 + 32367614-32368048,32368153-32368226,32368275-32368326 28 6.5
02_05_0208 - 26782955-26783275,26784317-26784632,26784732-26784835 28 6.5
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 28 6.5
02_02_0611 - 12127482-12128288 28 6.5
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 27 8.6
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 27 8.6
>12_01_0971 -
9781887-9781924,9782036-9782247,9782327-9784114,
9784630-9785432
Length = 946
Score = 33.9 bits (74), Expect = 0.099
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 556 TVGCGGYACPSQLYYLTVHGHVPWILELPAFLPK 455
TVGCGG+ C +L + H + W+L P +PK
Sbjct: 815 TVGCGGFPCLKELMFR--HSRLHWLLFEPGAMPK 846
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +2
Query: 257 NNRIQIFNSRGEFKMMFGSKGTG--SGEFDL-----PAGITTDTYGRII-VIDKDNHRVQ 412
+NRI + N GEF GS G G FD P G+ ++ I+ V D +NH ++
Sbjct: 593 HNRIVVTNLEGEFICQIGSSEEGLLDGTFDTASFNRPQGLAYNSKKNILYVADTENHALR 652
Query: 413 IFT 421
T
Sbjct: 653 TLT 655
>08_01_0287 - 2325991-2326566
Length = 191
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 213 LCVDKEGNIIVADREITEYRYSIAVANLR*CSDPRAPARVSSICPPASPPTRTDA 377
+C D+ G D+E+T++ ++ A R C R P++PP +A
Sbjct: 51 MCADEVGTATAPDQEVTDFVFAAVSAAARSCGATARAVR-DMARDPSTPPGAREA 104
>03_05_0006 +
19527479-19528769,19529693-19530105,19530220-19530430,
19530531-19530768,19530847-19530997,19531240-19531542
Length = 868
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 383 VIDKDNHRVQIFTSSGNFILKFGSFGKECGQFQYPWD 493
V+ + + Q+ +GNF+L+F S G F YP D
Sbjct: 122 VLSAGSAKAQLL-DNGNFVLRFASAGVAWQSFDYPTD 157
>03_02_0882 -
12121917-12124446,12124739-12124919,12125057-12125134,
12125731-12125764,12125864-12125975,12126053-12126238,
12126505-12126575
Length = 1063
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 312 PRAPARVSSICPPASPPTRTDASSLS-TKITT 404
P+APAR SS P +P TR+ S S TK TT
Sbjct: 642 PKAPARKSSPKPSPAPVTRSSWSGGSLTKATT 673
>01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701
Length = 369
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 55 PWNRTCLVGSGK-PSRATGCR*LSDRRGVQCPVCRCSLSEGKAKMKARSRG 204
P R LVG G P+ AT + +Q P CRC SEG + A + G
Sbjct: 14 PLGRGRLVGVGPAPAPATASQSNRPVPPLQLPRCRCHRSEGPWRTTAAANG 64
>11_06_0128 - 20389375-20389781,20389988-20392787
Length = 1068
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 336 SICPPASPPTRTDASSLSTKITTE---FRSSRRLVTSY*NSVRLGRNAGSSSIHGTWP 500
++ PP PP+ +S+ +TK T + S + +++S +S N+ SS H +WP
Sbjct: 21 ALSPPPPPPSSPVSSNDATKATVDELALLSIKSMLSSPSSSPLASWNSTSSIHHCSWP 78
>09_02_0085 +
4111333-4111492,4114766-4116044,4116113-4116206,
4116297-4116545
Length = 593
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +2
Query: 269 QIFNSRGEFKMMFGSKGTGSGEFDLPAGITTDTYGRIIVIDKDNHR-VQIFTSSGNFILK 445
++F ++K++ + T S AG+ YG + +D D+H+ + + T + +++
Sbjct: 462 RVFRHHDKYKLLMCTDLTKSST---RAGVYKPAYGGFVDMDIDDHKTISLRTLIDHSVVE 518
Query: 446 -FGSFGKECGQFQ-YPWDVAVNS 508
FG G+ C + YP VA +S
Sbjct: 519 SFGGGGRACITARVYPEHVATSS 541
>02_05_0871 + 32367614-32368048,32368153-32368226,32368275-32368326
Length = 186
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 189 GQVSRPWGLCVDKEGNIIVADREITEYRYSIAV 287
G + R WGLC D+E +I Y+Y I V
Sbjct: 103 GFILRSWGLCFDQERDITTNPDWEQMYQYEIPV 135
>02_05_0208 - 26782955-26783275,26784317-26784632,26784732-26784835
Length = 246
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +3
Query: 309 DPRAPARVS----SICPPASPPTRTDASSLSTKITTEFRSSRR 425
DPRAP R + + PP PP AS K+T E R + R
Sbjct: 66 DPRAPRRRAAKQPTAAPPPLPPRGAYASEALEKLTRETREAVR 108
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +2
Query: 260 NRIQIFNSRGEFKMMFGSKGTGSGEFDLPAGITTDTYGRIIVIDKDNHRVQIFTSSGNFI 439
NR+ ++ GEF M+F G G F +T + + + K + FT G +
Sbjct: 55 NRVLVYGIEGEFPMLFDIDGRGHELFPTEHSLTGENIA-VYALWKVPDLLPAFTLKGGEV 113
Query: 440 LKF 448
+F
Sbjct: 114 SRF 116
>02_02_0611 - 12127482-12128288
Length = 268
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 408 TLWLSLSITMMRPYVSVVMPAGRSNSPEPVPLDP 307
T++L LS+T+ VSVV+ +G +P P P P
Sbjct: 7 TVFLVLSLTLAT--VSVVVVSGAGEAPSPAPTGP 38
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 268 YSVISLSATIMLPSLSTQRPQGRETWPSSW-PSLPK 164
+S S +A ++ P+ + P+GR P SW PS P+
Sbjct: 312 FSPRSDAALVIRPTANLDEPRGRHMPPDSWHPSSPR 347
>06_03_0541 -
21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -1
Query: 218 AEAPRPRDLAFILAFPSEREHRHTGHWTPRRSDS 117
A AP +L FP R H HW P D+
Sbjct: 64 AAAPSSAPSPTVLPFPVARHRSHGPHWKPAARDA 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,240,364
Number of Sequences: 37544
Number of extensions: 423234
Number of successful extensions: 1682
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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