Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0251
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.2  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 329 GEFDLPAGITTDTYGRIIVIDKDNHRVQIFTSSGN 433
           G F LP  +    YGRI  +    HR    T S N
Sbjct: 205 GSFFLPMLVMLYVYGRISCVIASRHRNLEATESEN 239


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 81  SHETRSVPGPCSTRYCGRSNSLTLS 7
           +  +RS+  PC+++YCG      LS
Sbjct: 73  AESSRSID-PCASKYCGIGKECELS 96


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 483 YWNCPHSFPNEPNFNMKLPDDVKI*TLWLSLSITMMR 373
           +W  PH+  N PN  +   D + +    L L+  + +
Sbjct: 302 HWQLPHNSTNPPNILLYYRDSLALSVFALILTALLRK 338


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 155 RHTGHWTPRRSDSYRHPVARDGL 87
           +HT HW  +    + +P  R+GL
Sbjct: 21  KHTVHWFRKGLRLHDNPSLREGL 43


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -3

Query: 402 WLSLSITMMRPYVSVVMPAGRSNSPEPV 319
           WL   + M RP       A +S  P PV
Sbjct: 339 WLPCILRMSRPSDKEEREAQKSQKPSPV 366


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -2

Query: 547 CGGYACPSQLYYLTVHGHVP 488
           C G  C   +  L +HG  P
Sbjct: 40  CSGQVCLGSVMQLPIHGTEP 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,945
Number of Sequences: 438
Number of extensions: 4146
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)