Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0250
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175     30   1.6  
11_06_0338 + 22479804-22480651,22480764-22482954                       28   6.4  
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301     28   6.4  
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105...    28   6.4  

>10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175
          Length = 458

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +3

Query: 84  KDLHKLTMATWQEKKHLITRNL 149
           K++ KLT+ +W+E+K +IT N+
Sbjct: 425 KEIEKLTLTSWKEEKEIITLNV 446


>11_06_0338 + 22479804-22480651,22480764-22482954
          Length = 1012

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +3

Query: 96  KLTMATWQEKKHLITRNLQEVLGDDK----LTEILKQRDLKIYWG 218
           ++TM+  ++   L+TRN+ E L D +    + +IL + DL+I  G
Sbjct: 258 EITMSMLEDNPELLTRNISEHLKDKRYFVLIDDILDESDLEIIKG 302


>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
          Length = 1116

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 84  KDLHKLTMATWQEKKHLITRNLQEVLGD 167
           K++ KLT+ +W+E  H I  N  EV  D
Sbjct: 425 KEIEKLTLTSWKEIVHTIDDNKAEVSTD 452


>09_01_0073 -
           1057560-1058043,1058199-1058385,1058754-1059062,
           1059427-1060269,1061572-1062552,1063189-1063516
          Length = 1043

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 84  KDLHKLTMATWQEKKHLITRNLQEVLGD 167
           K++ KLT+ +W+E  H I  N  EV  D
Sbjct: 425 KEIEKLTLTSWKEIVHTIDDNKAEVSTD 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,036,597
Number of Sequences: 37544
Number of extensions: 319603
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)