Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0250
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23094| Best HMM Match : No HMM Matches (HMM E-Value=.)             135   4e-32
SB_7805| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   9e-09
SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               29   4.9  
SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)                  29   4.9  

>SB_23094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score =  135 bits (326), Expect = 4e-32
 Identities = 61/84 (72%), Positives = 73/84 (86%)
 Frame = +2

Query: 260 MLKIADFLKAGCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKL 439
           M KIADFL AGCEVTIL ADLHAYLDN+KAPWELL  R +YYE  IKAML SI VPL+KL
Sbjct: 1   MTKIADFLHAGCEVTILLADLHAYLDNLKAPWELLEHRVKYYEELIKAMLESINVPLDKL 60

Query: 440 KFVRGTEYQLSKEYTLDVYRLSSL 511
           KFV+GTEYQL+K+Y LDV++++++
Sbjct: 61  KFVKGTEYQLNKDYILDVFKMTTI 84



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 3/44 (6%)
 Frame = +2

Query: 563 NIHYLVD-FSIQT--SKLWDEEYLKVDAQFGGVDPRKIFTMSEK 685
           N  Y++D F + T  ++  DEEYLKVDAQFGGVD RKIFT +EK
Sbjct: 71  NKDYILDVFKMTTIATEALDEEYLKVDAQFGGVDQRKIFTFAEK 114


>SB_7805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 25/34 (73%), Positives = 28/34 (82%)
 Frame = +2

Query: 299 VTILFADLHAYLDNMKAPWELLALRTQYYEAAIK 400
           VTIL ADLHAY+DN+KAPWELL  R +YYE  IK
Sbjct: 1   VTILLADLHAYVDNLKAPWELLEHRVKYYEELIK 34


>SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 313

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 311 FADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEY 463
           + D HAY     +PW     +   Y   +KAM  ++      L+ V GT Y
Sbjct: 199 YIDFHAYSQMFLSPWGYTDAKPSNYTEHMKAMTAAVNA----LQAVHGTRY 245


>SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)
          Length = 841

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 466 LVLCTTYKLQFFKWDTNRCKHCLYSSFIILSAKC*KLPRSLHIIQ 332
           L++ T+ KL F+KWD  +   CL ++F  L  K    P   H++Q
Sbjct: 85  LLIATSNKLFFWKWDQPQPFACLQTNF--LEEKVSNQPPINHLLQ 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,950,408
Number of Sequences: 59808
Number of extensions: 373800
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)