Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0250
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical...   153   9e-38
AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA ...   153   9e-38
Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine...    29   2.5  
Z82052-7|CAD89750.1|  294|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    28   7.6  

>AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical
           protein Y105E8A.19 protein.
          Length = 722

 Score =  153 bits (372), Expect = 9e-38
 Identities = 81/151 (53%), Positives = 99/151 (65%)
 Frame = +2

Query: 233 KTSCGLFFPMLKIADFLKAGCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLT 412
           K   G   PM KIADFL+AG +VTILFADLHAYLDNMK+ WELL  R  YYE  IKA+L 
Sbjct: 58  KPHVGYLVPMRKIADFLQAGLKVTILFADLHAYLDNMKSSWELLKCRVIYYENVIKALLQ 117

Query: 413 SIGVPLEKLKFVRGTEYQLSKEYTLDVYRLSSL*QNMMLRKPEQKL*NK*NIHYLVDFSI 592
           S+ VP+E+L F +GTEYQLS+EYT DV RLS+        K   ++  +     L     
Sbjct: 118 SLDVPIEQLYFKKGTEYQLSREYTDDVLRLSAQVSQRDALKAGAEVVKQVESPLLSGLLY 177

Query: 593 QTSKLWDEEYLKVDAQFGGVDPRKIFTMSEK 685
              +  DE+YLKVD QFGGVD RKIF ++E+
Sbjct: 178 PLLQALDEQYLKVDGQFGGVDQRKIFILAEE 208



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
 Frame = +3

Query: 117 QEKKHLITRNLQEVLGDDKLTEILKQ--RDLKIYWGTATTGRPHVAY 251
           +E + LI RNLQE LG DKLT+ L+   +   +YWGTATTG+PHV Y
Sbjct: 17  KETRELILRNLQESLGVDKLTKQLETPGKVPHVYWGTATTGKPHVGY 63



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
 Frame = +2

Query: 245 GLFFPMLKIADFLKAG---CEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTS 415
           G   P+LKI +   AG      TIL + L A+LDN K  W  +  R  Y+     +++  
Sbjct: 419 GFIAPLLKIKEISDAGGVPVIATILVSPLEAFLDNEKVAWAAIQSRAVYFREMFISLIKH 478

Query: 416 IGVP-LEKLKFVRGTEYQLSKEYTLDVYRLSS 508
           + +  L K++     +  L +EY LD Y+++S
Sbjct: 479 LKLDGLVKVEIAGEHDKYLDREYVLDFYKMAS 510


>AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA
           synthetase (cytoplasmic)protein.
          Length = 722

 Score =  153 bits (372), Expect = 9e-38
 Identities = 81/151 (53%), Positives = 99/151 (65%)
 Frame = +2

Query: 233 KTSCGLFFPMLKIADFLKAGCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLT 412
           K   G   PM KIADFL+AG +VTILFADLHAYLDNMK+ WELL  R  YYE  IKA+L 
Sbjct: 58  KPHVGYLVPMRKIADFLQAGLKVTILFADLHAYLDNMKSSWELLKCRVIYYENVIKALLQ 117

Query: 413 SIGVPLEKLKFVRGTEYQLSKEYTLDVYRLSSL*QNMMLRKPEQKL*NK*NIHYLVDFSI 592
           S+ VP+E+L F +GTEYQLS+EYT DV RLS+        K   ++  +     L     
Sbjct: 118 SLDVPIEQLYFKKGTEYQLSREYTDDVLRLSAQVSQRDALKAGAEVVKQVESPLLSGLLY 177

Query: 593 QTSKLWDEEYLKVDAQFGGVDPRKIFTMSEK 685
              +  DE+YLKVD QFGGVD RKIF ++E+
Sbjct: 178 PLLQALDEQYLKVDGQFGGVDQRKIFILAEE 208



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
 Frame = +3

Query: 117 QEKKHLITRNLQEVLGDDKLTEILKQ--RDLKIYWGTATTGRPHVAY 251
           +E + LI RNLQE LG DKLT+ L+   +   +YWGTATTG+PHV Y
Sbjct: 17  KETRELILRNLQESLGVDKLTKQLETPGKVPHVYWGTATTGKPHVGY 63



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
 Frame = +2

Query: 245 GLFFPMLKIADFLKAG---CEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTS 415
           G   P+LKI +   AG      TIL + L A+LDN K  W  +  R  Y+     +++  
Sbjct: 419 GFIAPLLKIKEISDAGGVPVIATILVSPLEAFLDNEKVAWAAIQSRAVYFREMFISLIKH 478

Query: 416 IGVP-LEKLKFVRGTEYQLSKEYTLDVYRLSS 508
           + +  L K++     +  L +EY LD Y+++S
Sbjct: 479 LKLDGLVKVEIAGEHDKYLDREYVLDFYKMAS 510


>Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical
           protein C31H5.3 protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 208 IFKSLC-FKISVSLSSPKTSCKFRVIKCFFSC 116
           IF SLC F I V+ + P+TS    +I+ +FSC
Sbjct: 267 IFMSLCVFMIMVAEAMPQTSDALPLIQIYFSC 298


>AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine
           receptor (63.2 kD)(acr-19) protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 208 IFKSLC-FKISVSLSSPKTSCKFRVIKCFFSC 116
           IF SLC F I V+ + P+TS    +I+ +FSC
Sbjct: 267 IFMSLCVFMIMVAEAMPQTSDALPLIQIYFSC 298


>Z82052-7|CAD89750.1|  294|Caenorhabditis elegans Hypothetical
           protein T25E12.12 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 232 PVVAVPQYIFKSLCFKIS-VSLSSPKTSCKFRVIKCFFSCQVAMVNLWRS 86
           P++ +P  I K +  K++ + L+  K S  F V+     CQ+  + LW S
Sbjct: 12  PILKLPVEIIKQILEKLNPIELAIRKVSRSFEVLLDKLPCQIRKLVLWVS 61


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 1 protein.
          Length = 1383

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 590 IQTSKLWDEEYLKVDAQFGGVDPRKIFT-MSEK 685
           IQ ++LW++E+LK   ++    P+ IF+ M+E+
Sbjct: 582 IQKAELWEKEFLKFCKEYREKSPKVIFSFMAER 614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,146
Number of Sequences: 27780
Number of extensions: 312250
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)