Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0250
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25780.1 68418.m03060 eukaryotic translation initiation facto...    29   3.1  
At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting...    28   7.1  
At2g14290.1 68415.m01598 F-box family protein contains F-box dom...    27   9.3  

>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
           subunit 9, putative / eIF-3 eta, putative / eIF3b,
           putative nearly identical to SP|Q9C5Z1 Eukaryotic
           translation initiation factor 3 subunit 9 (eIF-3 eta)
           (eIF3 p110) (eIF3b) {Arabidopsis thaliana}
          Length = 714

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 117 QEKKHLITRNLQEVLGDDKLTEILKQR---DLKIYWGTATTGRP 239
           QE+ ++   NLQ+ L DDK  + L  R   D ++YW  A   +P
Sbjct: 159 QERPYVPGENLQKWLTDDKARDQLVIRFGHDTEVYWNDARQKKP 202


>At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 307

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 193 CFKISVSLSSPKTSCKFRVIKCFFSCQVAMVNLWRSF 83
           C  + +S +SP+ +C F ++   F   V    +W  F
Sbjct: 47  CISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKF 83


>At2g14290.1 68415.m01598 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 353

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 597 VWIEKSTK*WMFYLFYNFCSGFLSIMFCYNDDN 499
           +W+++ T  ++  LF+NF SG  ++ FC   D+
Sbjct: 142 LWVDEKTAEYVVVLFFNFPSG--NVGFCKKGDD 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,311,251
Number of Sequences: 28952
Number of extensions: 282750
Number of successful extensions: 693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)