Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0249
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    28   1.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.2  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    26   7.3  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   7.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   7.3  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   9.7  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    25   9.7  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   9.7  

>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 757 PQGLDVKVPSVPLYTTLSLQGPGFLVRVLMSPI 659
           P G  + VP   L+T L ++G  F  R+ +SP+
Sbjct: 21  PAGAAIGVPQTKLFTPLKIRGVEFHNRMFVSPM 53


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -3

Query: 232 NSSPTRASSVSMSYAKSPTWRITSKWSRSASSCKYDRE*AFLLPISPYIAARNNQSSPSG 53
           +SSPT +SS   S + SP+   +S +S + SS K     +  +  S   ++    SS S 
Sbjct: 333 SSSPTSSSSTISSSSSSPS---SSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSS 389

Query: 52  GVLKENSSDH 23
                +SS H
Sbjct: 390 SSRPASSSSH 399


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 499 KQVKRPWIILFGHRPMYCSNSNDIDCSVELTRVGIAGMF 615
           +QV+  +   +GH P    + +DI C    +   + G+F
Sbjct: 374 EQVREMFTRFYGHSPEMADDLSDIVCPKNTSMASLQGLF 412


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 76  NNQSSPSGGVLKENSSDHPYTEPT 5
           N++ S  GG + +N   +PY EPT
Sbjct: 847 NHRDSTVGGGILKNPKAYPYREPT 870


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 728 GTIVHNIIVTRARISRKSAHEPHMTTSTPNSISNG 624
           G  + N+      ++R     PH+T  +PN ++NG
Sbjct: 381 GLDLQNLEEAPMNLTRPINANPHLTNHSPNDLTNG 415


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 319  REPLLDARPGLEPVLQLRPGPRALRVR 399
            +  LLD  P L P   LRPG     VR
Sbjct: 1267 KSKLLDLTPLLTPAFTLRPGAATYNVR 1293


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 519 PGPLDLFSGVFASAKSSFSQSYWLTINL-SPYSVK*YTSVDTDTKCTGP 376
           PG LD  +G+FA   SSF ++    I   +  SVK Y  VD  T  T P
Sbjct: 415 PGSLDSEAGIFA---SSFDKTGLRLITCEADKSVKIYKQVDNATPETHP 460


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 84  AIYGDMGNKNAHSLSYLQDEAERDHFDVIL 173
           AI   +GN + H + YL     + HF ++L
Sbjct: 548 AILKGLGNNHPHIVKYLDFVKTKHHFGIVL 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,376
Number of Sequences: 5004
Number of extensions: 65046
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)