Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0249
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0674 - 35449373-35449465,35449959-35450112,35450763-354508... 52 7e-07
03_05_0063 - 20375038-20375257,20375338-20375426,20375542-203757... 49 4e-06
08_01_1067 + 10893720-10894585,10895125-10895348,10895518-108957... 45 8e-05
03_02_0150 + 5941560-5941739,5942027-5942118,5942232-5942298,594... 42 4e-04
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454... 42 6e-04
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882... 42 8e-04
01_06_1023 + 33890733-33891034,33891171-33891258,33894253-338945... 42 8e-04
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 41 0.001
07_01_0084 + 657846-658538,660652-661920 41 0.001
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 39 0.004
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344... 37 0.022
12_01_0328 + 2535049-2535213,2536611-2537777 36 0.038
11_01_0320 - 2406706-2406943,2407297-2407385,2407463-2408335,240... 35 0.089
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 32 0.62
12_01_0046 - 373974-374188,374298-374580,374698-374764,375705-37... 31 1.1
08_02_0917 - 22609543-22609852,22609925-22610266,22610596-226108... 31 1.4
11_02_0144 + 8773786-8773985,8774339-8774459,8774917-8775042 29 3.3
04_03_0845 - 20245836-20246046,20246137-20246219,20246330-202464... 29 3.3
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408... 29 4.4
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 29 4.4
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 29 4.4
02_02_0637 - 12491706-12492575,12492580-12492657 29 5.8
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 29 5.8
>03_06_0674 -
35449373-35449465,35449959-35450112,35450763-35450860,
35450947-35451234,35451313-35451503,35451789-35452006,
35452314-35452653,35452726-35453167
Length = 607
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Frame = +2
Query: 263 VPYMTCPGNHE-----EKYNFSNYVNRFSMPGPDSN----LYYSFDLGPVHFVSVSTEVY 415
+P M GNHE + F++Y +RFS P +S YYSFD G +HF+ ++
Sbjct: 270 IPMMVVEGNHEIEEQIDNKTFASYSSRFSFPSTESGSFSPFYYSFDAGGIHFIMLAAYAD 329
Query: 416 YFTEYGLKLIVNQYDWLKEDLAEAN 490
Y ++ G QY WL++DLA+ +
Sbjct: 330 Y-SKSG-----KQYKWLEKDLAKVD 348
>03_05_0063 -
20375038-20375257,20375338-20375426,20375542-20375730,
20377507-20378175,20379597-20379806
Length = 458
Score = 49.2 bits (112), Expect = 4e-06
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Frame = +2
Query: 254 AATVPYMTCPGNHEE------KYNFSNYVNRFSMPGPDS----NLYYSFDLGPVHFVSVS 403
A+T P+M GNHE+ K F +Y R+ MP +S NLYYSF + VH + +
Sbjct: 218 ASTRPWMVTEGNHEKERIPFFKSGFQSYNARWKMPYEESESTSNLYYSFKVAGVHAIMLG 277
Query: 404 TEVYYFTEYGLKLIVNQYDWLKEDLAEAN 490
+ +T+Y +QY WLK DLA+ +
Sbjct: 278 S----YTDYDES--SDQYAWLKADLAKVD 300
>08_01_1067 +
10893720-10894585,10895125-10895348,10895518-10895708,
10896082-10896390
Length = 529
Score = 44.8 bits (101), Expect = 8e-05
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Frame = +2
Query: 263 VPYMTCPGNHEEK-------YNFSNYVNRFSMP----GPDSNLYYSFDLGPVHFVSVSTE 409
+P M GNHE + F++Y+ RF++P G ++ YYSF+ G +HF+ +
Sbjct: 298 IPMMVIEGNHEIEPQGQGGAVTFASYLARFAVPSEESGSNTKFYYSFNAGGIHFIMLGAY 357
Query: 410 VYYFTEYGLKLIVNQYDWLKEDL 478
V Y G QY WL++DL
Sbjct: 358 VDY-NRTGA-----QYSWLEKDL 374
>03_02_0150 +
5941560-5941739,5942027-5942118,5942232-5942298,
5942401-5942523,5942692-5942784,5943149-5943278,
5943483-5943564,5943682-5943814,5944246-5944451,
5944538-5944663,5945024-5945333,5945518-5945643,
5946151-5946456
Length = 657
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Frame = +3
Query: 9 GSVYGWSELFSFKTPP-EGEDWLLRAAIYGDMGNKNAHSLSYLQD----------EAERD 155
GS+ W +SF+ PP GED L R I+GDMG A + D + +D
Sbjct: 268 GSII-WGHEYSFQAPPYPGEDSLQRVVIFGDMGKAEADGSNEFNDFEPGSLNTTYQLIKD 326
Query: 156 --HFDVILHVGDFAYDMDTEDARVGDEFMRQIQPLPPLCP 269
+ D+++H+GD Y D+F Q++P+ P
Sbjct: 327 LKNIDMVIHIGDICY--ANGYLSQWDQFTAQVEPIASSVP 364
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 508 KRPWIILFGHRPM-YCSNSNDIDCSVELTRVGIAGMFGLEPLLIEFGVDVVIWG 666
K+PW+I HR + Y S S ++ E T G L+PL ++ VD+ ++G
Sbjct: 451 KQPWLIFLAHRVLGYSSASFYVE---EGTTEEPMGRESLQPLWQKYKVDIAMYG 501
>12_02_0869 -
23844378-23844689,23844924-23845233,23845322-23845447,
23845522-23845727,23845832-23845964,23846045-23846208,
23846856-23846948,23847074-23847196,23847318-23847384,
23847473-23847564,23847667-23847779,23847796-23847845,
23848098-23848189
Length = 626
Score = 41.9 bits (94), Expect = 6e-04
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Frame = +3
Query: 24 WSELFSFKTPP-EGEDWLLRAAIYGDMGNKNAHSLSYLQD----------EAERD--HFD 164
WS+ +SFK P G+D + R I+GDMG A + D + RD + D
Sbjct: 281 WSKSYSFKASPYPGQDSVQRVVIFGDMGKAEADGSNEFNDFQPGSLNTTYQIIRDLKNID 340
Query: 165 VILHVGDFAYDMDTEDARVGDEFMRQIQPLPPLCP 269
+++H+GD Y D+F QI+P+ P
Sbjct: 341 MVVHIGDICY--ANGYLSQWDQFTAQIEPIASTVP 373
>09_04_0660 -
19286653-19287271,19287791-19287916,19288016-19288221,
19288417-19288549,19288632-19288713,19288906-19289035,
19289187-19289279,19289391-19289510,19289594-19289660,
19290079-19290137,19290719-19290943
Length = 619
Score = 41.5 bits (93), Expect = 8e-04
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Frame = +3
Query: 24 WSELFSFKTPP-EGEDWLLRAAIYGDMGNKN---AHSLSYLQDEA---------ERDHFD 164
W + +SFK PP G+ L R I+GDMG ++ S Q + + D+ D
Sbjct: 275 WGKFYSFKAPPFPGQKSLQRVVIFGDMGKAERDGSNEYSNYQPGSLNTTDTLIKDLDNID 334
Query: 165 VILHVGDFAYDMDTEDARVGDEFMRQIQPLPPLCP 269
++ H+GD Y D+F +Q++P+ P
Sbjct: 335 IVFHIGDITY--ANGYISQWDQFTQQVEPITARVP 367
>01_06_1023 +
33890733-33891034,33891171-33891258,33894253-33894522,
33894616-33894724,33894833-33894950,33895051-33895183,
33895306-33895493,33895566-33895752,33895797-33895841,
33895850-33895917,33896093-33896186,33896284-33896475,
33896656-33896736,33897363-33897425
Length = 645
Score = 41.5 bits (93), Expect = 8e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 508 KRPWIILFGHRPMYCSNSNDIDCSVELTRVGIAGMFGLEPLLIEFGVDVVIWG 666
+ PW+I GHRPMY S+S+ I SV+ V +EPLL+ VD+V +G
Sbjct: 495 RTPWVIFIGHRPMY-SSSSGIPPSVDPNFVS-----SVEPLLLNHKVDLVFFG 541
Score = 33.1 bits (72), Expect = 0.27
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 25/104 (24%)
Frame = +2
Query: 254 AATVPYMTCPGNHEEKYNFSN---------------YVNRFSMPGPDSNL-YYSFDLGPV 385
A+ V YMT GNHE Y S Y + F MP + +YS + G V
Sbjct: 389 ASQVSYMTAIGNHERDYAGSGSVYPTPDSGGECGVPYESYFPMPASGRDKPWYSIEQGSV 448
Query: 386 HFVSVSTEVYYFTEYGLKLIVNQ---------YDWLKEDLAEAN 490
HFV +STE + + + IV Y+W++ DL+ +
Sbjct: 449 HFVVMSTEHEWSEKSDQEYIVYMFMSLSKFCCYNWMEMDLSSVD 492
Score = 32.3 bits (70), Expect = 0.47
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Frame = +3
Query: 21 GWSELFSFKTPPEGEDWLLRAAIYGDMGNK--NAHSLSYLQD-----------EAERDHF 161
GWS F+TPP L I+GDMG + Y+Q E +
Sbjct: 300 GWSNTTEFRTPPAAGSGELSFVIFGDMGKAPLDPSVEHYIQPGSTSVAKAVAAEMQTGKV 359
Query: 162 DVILHVGDFAY 194
D I H+GD +Y
Sbjct: 360 DSIFHIGDISY 370
>12_02_0870 - 23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 41.1 bits (92), Expect = 0.001
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Frame = +3
Query: 24 WSELFSFKTPP-EGEDWLLRAAIYGDMGNK---------NAHSLS-YLQDEA--ERDHFD 164
WS+ +SF+ P G+D + R I+GDMG N S Y ++ E D D
Sbjct: 868 WSKSYSFRASPYPGQDSVQRVVIFGDMGKAEIDGSDEYGNYEQASLYTTNQLIKELDSID 927
Query: 165 VILHVGDFAYDMDTEDARVGDEFMRQIQPLPPLCP 269
+++H+GD +Y D+F +QI+P+ P
Sbjct: 928 MVIHIGDLSY--ANGYLSQWDQFTQQIEPIASTVP 960
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 344 PDS-NLYYSFDLGPVHFVSVSTEVYYFTEYGLKLIVNQYDWLKEDLAEAN 490
PD+ NLYYSFD G VHFV +STE + +QY+++K DL + N
Sbjct: 388 PDTRNLYYSFDSGVVHFVYMSTETNFVQG------SDQYNFIKADLEKVN 431
Score = 35.9 bits (79), Expect = 0.038
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 508 KRPWIILFGHRPMYCSNSNDIDCSVELTRVGIAGMFGLEPLLIEFGVDVVIWG 666
+ P+I+ GHRPMY S++ D + + LEPLL+ + V + +WG
Sbjct: 434 RTPFIVFQGHRPMYTSSNEARDFAHRQQM-----LQNLEPLLVTYKVTLALWG 481
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 39.1 bits (87), Expect = 0.004
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Frame = +2
Query: 242 DPAAAATVPYMTCPGNHE-------EKYNFSNYVNRFSMP-----GPD-SNLYYSFDL-- 376
+P A+A P+M GNHE E + F Y R+ MP P SNLYYSFD+
Sbjct: 203 EPLASAR-PWMVTQGNHEVERIPLVEPHAFKAYNARWRMPFDAGASPSGSNLYYSFDVAG 261
Query: 377 GPVHFVSVSTEVYYFTEYGLKLIVNQYDWLKEDLA 481
G VH + + + + +Y Q+ WL+ DLA
Sbjct: 262 GAVHVIMLGS----YADYAAGSA--QHRWLRRDLA 290
>08_02_1367 +
26432425-26432622,26434071-26434162,26434337-26434403,
26434519-26434638,26434792-26435023,26435525-26435606,
26435985-26436117,26436332-26436537,26436633-26436758,
26437208-26437907
Length = 651
Score = 36.7 bits (81), Expect = 0.022
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Frame = +3
Query: 9 GSVYGWSELFSFKTPP-EGEDWLLRAAIYGDMG-----------NKNAHSLSYLQDEAER 152
GS+ W + ++F+ PP G++ L R ++GDMG N SL+ E
Sbjct: 276 GSIV-WGKQYTFRAPPFPGQNSLQRIIVFGDMGKAERDGSNEFANYQPGSLNTTDRLVED 334
Query: 153 -DHFDVILHVGDFAYDMDTEDARVGDEFMRQIQPL 254
D++D++ H+GD Y D+F Q+ P+
Sbjct: 335 LDNYDIVFHIGDLPY--ANGYISQWDQFTAQVAPI 367
>12_01_0328 + 2535049-2535213,2536611-2537777
Length = 443
Score = 35.9 bits (79), Expect = 0.038
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Frame = +2
Query: 242 DPAAAATVPYMTCPGNHEEKY-------NFSNYVNRFSMP-----GPD-SNLYYSFDL-- 376
+P A+A P+M GNHE + F+ Y R+ MP P SNLYYSFD+
Sbjct: 200 EPLASAR-PWMVTEGNHEVERIPVIHPRPFTAYDARWRMPHDAGASPSGSNLYYSFDVAG 258
Query: 377 GPVHFVSVSTEVYYFTEYGLKLIVNQYDWLKEDLA 481
G VH V + + Y Q+ WL+ DLA
Sbjct: 259 GAVHVVMLGSYAGYAAGSA------QHRWLRRDLA 287
>11_01_0320 -
2406706-2406943,2407297-2407385,2407463-2408335,
2408882-2409310
Length = 542
Score = 34.7 bits (76), Expect = 0.089
Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Frame = +2
Query: 245 PAAAATVPYMTCPGNHEEKY-------NFSNYVNRFSMP----GPDSNLYYSFDL--GPV 385
P A+A P+M GNHE + F+ Y R+ MP G SNLYYSFD G
Sbjct: 291 PLASAR-PWMVTEGNHEIEALPVVGIAPFAAYNARWRMPREESGSPSNLYYSFDAAGGAA 349
Query: 386 HFVSVSTEVYYFTEYGLKLIVNQYDWLKEDLA 481
H V + + Y E G Q WL+ DLA
Sbjct: 350 HVVMLGS--YAEFEEGSP----QRAWLERDLA 375
>09_04_0659 +
19282366-19282584,19282668-19282759,19282868-19282958,
19283393-19283512,19283638-19283730,19283795-19283933,
19284060-19284141,19284229-19284361,19285024-19286010
Length = 651
Score = 31.9 bits (69), Expect = 0.62
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Frame = +3
Query: 24 WSELFSFKTPPE-GEDWLLRAAIYGDMG---NKNAHSLSYLQDEAE-------RD--HFD 164
W + +F+ P G+ L R I+GDMG + ++ L+ Q A+ +D ++D
Sbjct: 295 WGKSSTFRASPSPGQASLQRIVIFGDMGLGQSDGSNELAGFQPGAQVTTERLIKDLPNYD 354
Query: 165 VILHVGDFAYDMDTEDARVGDEFMRQIQPLPPLCP 269
+ H+GD +Y D+F QI P+ P
Sbjct: 355 AVFHIGDLSY--ANGFLAQWDQFTAQISPVASRVP 387
>12_01_0046 -
373974-374188,374298-374580,374698-374764,375705-375889
Length = 249
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 105 NKNAHSLSYLQDEAERDHFDVILHVGDFAYDMDTEDARVGDEFMRQIQPL 254
NKN+ +S L E ERD F +I+HV Y + +A+ DE ++PL
Sbjct: 49 NKNSPPISSLHSEGERDFF-IIIHV---RYALHHYNAKHPDEEFDAVKPL 94
>08_02_0917 -
22609543-22609852,22609925-22610266,22610596-22610858,
22611318-22612349
Length = 648
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -2
Query: 707 IVTRARISRKSAHEPHMTTSTPNSISNGSRPNIPAIPTRVSSTLQ 573
++TRARI A + TT PN N RPN PA R LQ
Sbjct: 207 VITRARIPLSPAPQTVSTTPPPNR--NERRPNRPAAADRRELALQ 249
>11_02_0144 + 8773786-8773985,8774339-8774459,8774917-8775042
Length = 148
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 277 SHVGHSGGSGWICLMNSSPTRA--SSVSMSYAKSPTWRITSKW 155
S + GG W+CL + +A SV P WR++ +W
Sbjct: 20 SQKDYLGGGSWLCLGLRAGQKAISGSVQGDLGPPPMWRLSGRW 62
>04_03_0845 -
20245836-20246046,20246137-20246219,20246330-20246470,
20246561-20247421
Length = 431
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 322 EPLLDARPGLEPV-LQLRPGPRALRVRIDRGVLLHGVW 432
+ +L P L V L+ GPR++RVR R ++L GVW
Sbjct: 191 QSVLSGCPALRTVMLKHVEGPRSIRVRSCRSLVLLGVW 228
>11_01_0521 +
4083594-4083763,4083765-4083963,4084059-4084244,
4085834-4086025,4086979-4087200,4089238-4089444,
4089681-4090082,4090201-4090230,4090307-4090318
Length = 539
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 114 AHSLSYLQDEAERDHFDVILHVGDFAYDMDTEDARVG 224
A+SL DE E+D+F + L + +FA +M+ +VG
Sbjct: 151 AYSLKERVDELEKDNFMLGLKMNEFAQEMERFQMQVG 187
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 103 PISPYIAARNNQSSPSGGVLKENS 32
P++P AA + +SPSGG L +NS
Sbjct: 119 PLAPAAAAATSPASPSGGSLPQNS 142
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 665 PHMTTSTPNSISNGSRPNIPAIPTRVSSTLQSMSL 561
P TP S GS+P++P +PT +S++ ++S+
Sbjct: 289 PESAPQTPPS-KVGSQPSVPVVPTTISTSTAAVSV 322
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -2
Query: 701 TRARISRKSAHEPHMTTSTPNSISNGSRPNIPAIPTRVSSTLQSMS 564
TR+R R S P TST +S S P +PT SS S S
Sbjct: 108 TRSRTPRSSRRSPARATSTTHSPFCHSWRTTPWLPTSCSSPTSSTS 153
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 298 LLMVSRASHVGHSGGSGWICLMNSSPTRASSVSMSYAKSPT 176
LL R HVG+ GG G + ++P R+ S S A + T
Sbjct: 376 LLSRQRVEHVGNGGGGGRHVAVTATPARSVVSSYSTATATT 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,018,162
Number of Sequences: 37544
Number of extensions: 473373
Number of successful extensions: 1380
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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