Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0249
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 266 PYMTCPGNHEEKYNFSNYVNRFSMPGPDSNLYYSFDL--GPVHFVSVSTE 409
           PY T    +++ Y  S Y N      PDS   Y  +L   P  F SV+++
Sbjct: 368 PYST--PEYDDTYMDSGYTNEIDFSFPDSVSDYPLELKGSPDGFESVTSQ 415


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 302 YNFSNYVNRFSMPGPDSNLYYSFDLGPVHFVSVSTEVYY 418
           YN++N   +++    +  LYY   +  +  + V   VYY
Sbjct: 322 YNYNNNNYKYNYNNYNKKLYYKNYIINIEQIPVPVPVYY 360


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 596 TRVSSTLQSMSLELLQYMGRWPN 528
           T  +STL S   +LL   G W N
Sbjct: 654 TLAASTLYSKRPDLLHLFGSWSN 676


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 596 TRVSSTLQSMSLELLQYMGRWPN 528
           T  +STL S   +LL   G W N
Sbjct: 654 TLAASTLYSKRPDLLHLFGSWSN 676


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 596 TRVSSTLQSMSLELLQYMGRWPN 528
           T  +STL S   +LL   G W N
Sbjct: 654 TLAASTLYSKRPDLLHLFGSWSN 676


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 28  LSCFPSRLLRKAKTGYCGPLYTVIWAIKML 117
           + C+  +  R ++  + GP+ ++  +IKML
Sbjct: 85  MDCYFRQSWRDSRLSFLGPIKSLSLSIKML 114


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 87  IYGDMGNKNAHSLSYLQDEAER 152
           +YGD+ N    ++SY+ D   R
Sbjct: 360 VYGDLHNFGHVAISYIHDPDHR 381


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 229 SSPTRASSVSMSYAKSPTWRITSKWSRSAS 140
           +S  +++  S+   KSP W+  +K +RS +
Sbjct: 733 NSAVKSTIQSLMKLKSPEWKDLAKKARSVN 762


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,714
Number of Sequences: 438
Number of extensions: 5426
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)