Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0248
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 130 1e-30
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 81 5e-16
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 81 5e-16
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 78 5e-15
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 73 1e-13
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 73 2e-13
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 70 1e-12
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 70 1e-12
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 65 5e-11
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 64 6e-11
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 62 3e-10
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 59 3e-09
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 58 7e-09
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 55 5e-08
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 54 1e-07
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 48 4e-06
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 48 8e-06
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 45 4e-05
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 45 4e-05
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 43 2e-04
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 41 9e-04
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 39 0.003
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 37 0.014
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 36 0.019
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 33 0.23
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 33 0.23
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 32 0.40
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ... 32 0.40
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ... 32 0.40
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 29 3.8
AC026301-11|AAK68891.2| 273|Caenorhabditis elegans Hypothetical... 28 5.0
AC006832-2|AAO38580.1| 366|Caenorhabditis elegans Hypothetical ... 28 5.0
AC006832-1|AAO38581.1| 376|Caenorhabditis elegans Hypothetical ... 28 5.0
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 28 6.6
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 27 8.7
AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical ... 27 8.7
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 130 bits (313), Expect = 1e-30
Identities = 48/85 (56%), Positives = 71/85 (83%)
Frame = +1
Query: 1 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP 180
RLQKEL D++ G+K++ +++ +E+N+L W L++PD PYNKGAF++ I FP +YPFKP
Sbjct: 6 RLQKELGDLKNCGVKAYENVECEETNLLKWTVLLIPDKEPYNKGAFKVGITFPVDYPFKP 65
Query: 181 PKISFKTKIYHPNIDEKGQVCLPII 255
PK++F+TKIYHPN+DE+G+ CLPI+
Sbjct: 66 PKVAFETKIYHPNVDEEGKFCLPIV 90
Score = 103 bits (248), Expect = 8e-23
Identities = 43/62 (69%), Positives = 55/62 (88%)
Frame = +3
Query: 255 SAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSEK 434
+AENWKPATKT+QV+ AL++L+N+PEP HP+RA++AEEF KD KKF K AEE T+KH+EK
Sbjct: 91 TAENWKPATKTEQVMMALLSLINEPEPSHPIRADVAEEFQKDHKKFMKTAEEHTRKHAEK 150
Query: 435 RP 440
RP
Sbjct: 151 RP 152
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFK 177
R+QKEL D+ + V + ++ WQ I+ P PY G F + I+FP +YPFK
Sbjct: 5 RIQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 178 PPKISFKTKIYHPNIDEKGQVCLPII 255
PPK++F T+IYHPNI+ G +CL I+
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDIL 89
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 267 WKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHS 428
W PA +V+ ++ +L+ DP P+ PL E+A + DR+++ + A E+T+K++
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFK 177
R+QKEL D+ + V + ++ WQ I+ P PY G F + I+FP +YPFK
Sbjct: 5 RIQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 178 PPKISFKTKIYHPNIDEKGQVCLPII 255
PPK++F T+IYHPNI+ G +CL I+
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDIL 89
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 267 WKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHS 428
W PA +V+ ++ +L+ DP P+ PL E+A + DR+++ + A E+T+K++
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 78.2 bits (184), Expect = 5e-15
Identities = 34/85 (40%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 LQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKP 180
L+K+L D+R+ + F VD+++I W+ L++ P + Y G F+ ++FP +YP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 181 PKISFKTKIYHPNIDEKGQVCLPII 255
PK+ F ++I+HPNID++G VC+ I+
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISIL 92
Score = 31.1 bits (67), Expect = 0.70
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = +3
Query: 261 ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSEK 434
E W P + ++ ++++++ DP E P + A+ ++ +F K + ++ E+
Sbjct: 107 ERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQEE 164
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +1
Query: 67 DESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVC 243
DESN + +I PD+ P+ G F++E+ P EYP PK+ F TKIYHPNID+ G++C
Sbjct: 29 DESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMTKIYHPNIDKLGRIC 88
Query: 244 LPIIVQK 264
L I+ K
Sbjct: 89 LDILKDK 95
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/57 (28%), Positives = 35/57 (61%)
Frame = +3
Query: 261 ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSE 431
+ W PA + V+ ++ AL++ P PE PL ++AE++ + + K A+++T +++
Sbjct: 94 DKWSPALQIRTVLLSIQALLSAPNPEDPLATDVAEQWKTNEAEAIKTAKQWTMNYAQ 150
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 LQKELNDIRQSGLKSFRDIQVDESNILTWQ-GLIVPDNPPYNKGAFRIEINFPAEYPFKP 180
L EL +++ ++ F I V+E N+ W G+ P Y G F+ I FP+ YP+ P
Sbjct: 15 LTMELKNLQSQPVEGFT-IDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNYPYSP 73
Query: 181 PKISFKTKIYHPNIDEKGQVCLPII 255
P + F TK++HPN+ E G +C+ I+
Sbjct: 74 PSMKFTTKVWHPNVYENGDLCISIL 98
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 70.1 bits (164), Expect = 1e-12
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +1
Query: 70 ESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCL 246
E NILTW+ +I P P+ G F++ + F EYP KPP + F +K++HPN+ G +CL
Sbjct: 30 EDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICL 89
Query: 247 PII 255
I+
Sbjct: 90 DIL 92
Score = 31.9 bits (69), Expect = 0.40
Identities = 9/52 (17%), Positives = 29/52 (55%)
Frame = +3
Query: 267 WKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKK 422
W P ++ ++ +L+++P P P + A+ + ++R+++ K ++ ++
Sbjct: 96 WSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 70.1 bits (164), Expect = 1e-12
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +1
Query: 70 ESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCL 246
E NILTW+ +I P P+ G F++ + F EYP KPP + F +K++HPN+ G +CL
Sbjct: 30 EDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICL 89
Query: 247 PII 255
I+
Sbjct: 90 DIL 92
Score = 31.9 bits (69), Expect = 0.40
Identities = 9/52 (17%), Positives = 29/52 (55%)
Frame = +3
Query: 267 WKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKK 422
W P ++ ++ +L+++P P P + A+ + ++R+++ K ++ ++
Sbjct: 96 WSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 64.9 bits (151), Expect = 5e-11
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Frame = +1
Query: 1 RLQKELNDIRQSGLKSFRDIQVD--ESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYP 171
RLQ+E ++ + S I ++ N+ +G I P + PY G F ++I P +YP
Sbjct: 8 RLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYP 67
Query: 172 FKPPKISFKTKIYHPNI-DEKGQVCLPIIV-QKIGSLLPRLIKLS 300
F PP + F TKI+HPN+ + G +CL I+ Q SL R + LS
Sbjct: 68 FSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAASLTLRTVLLS 112
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +3
Query: 261 ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSE 431
+ W + V+ ++ AL+ PEP+ P A +A+++++ F AE +T K ++
Sbjct: 98 DQWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFKATAEYWTTKFAK 154
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFK 177
RL E ++ + +DE N W+ LI P+ + G F I FP +YP
Sbjct: 8 RLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDYPLS 67
Query: 178 PPKISFKTKIYHPNIDEKGQVCLPII 255
PPK+ F I+HPNI G+VC+ I+
Sbjct: 68 PPKMRFTCGIFHPNIYADGRVCISIL 93
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +3
Query: 255 SAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKK 422
S E W P ++++ ++V+++ +P E P A+ + +DR +F K A+ +K
Sbjct: 106 SNERWSPVQSIEKILLSVVSMLAEPNDESPANVSAAKMWREDRAQFEKIADSLVRK 161
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 106 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCLPIIVQ 261
P + Y G +RI ++ P +YPFK P I F KI+HPNIDE G VCL +I Q
Sbjct: 42 PKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQ 94
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 18/112 (16%)
Frame = +1
Query: 19 NDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKIS- 192
+DI ++G+ +++ E+N++ +G I P+ PY G F I+++ P YPF+PPK++
Sbjct: 34 SDITEAGIH----VEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTE 89
Query: 193 --------------FKTKIYHPNI-DEKGQVCLPIIVQK-IGSLLPRLIKLS 300
F T+I+HPNI + G +CL I+ K SL R + LS
Sbjct: 90 IIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLS 141
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 261 ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFT 416
+ W + V+ +L A++ PEP P A +A++F+ + FT A +T
Sbjct: 127 DKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWT 178
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 57.6 bits (133), Expect = 7e-09
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP 180
R++KE+ D+ ++ + +D + E +Q I+ D Y F + ++ EYPFKP
Sbjct: 17 RIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVLYKNMIFTLTLDVNVEYPFKP 76
Query: 181 PKISFKTKIYHPNIDE-KGQVCLPIIVQK 264
P + F +YHPN+D ++C P+++Q+
Sbjct: 77 PYLKFCHNVYHPNVDPVTCELCSPMLLQE 105
Score = 49.2 bits (112), Expect = 2e-06
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +3
Query: 261 ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKK 422
ENWKP T + V+ L+ L+N+P+ P+ + A +++ ++ +F K + E KK
Sbjct: 105 ENWKPETTMEDVLLNLIVLLNEPDLSRPVNIDAAHDYIHNKVEFVKKSTELAKK 158
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = +1
Query: 100 IVPDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIIVQ 261
+ P Y G FR +I P EY PP + TK++HPNI+E G +CL I+ Q
Sbjct: 65 VTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQ 118
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 53.6 bits (123), Expect = 1e-07
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Frame = +1
Query: 1 RLQKELNDIRQS-GLKSFRDIQV--DESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 168
R+ KEL I + L + I V DE + + LI PD+ PY G F +I FP Y
Sbjct: 413 RIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGY 472
Query: 169 PFKPPKISFKTK-----IYHPNIDEKGQVCLPII 255
PF PPK +F T ++PN+ G++CL I+
Sbjct: 473 PFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSIL 506
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 91 QGLIVP-DNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCL 246
QG+I + PY G F ++I YPFK P + F TKI+HP++ G +CL
Sbjct: 382 QGIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICL 435
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +1
Query: 106 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIIVQKIGSLLPR 285
P P+ G + + +NF ++P PP FKT ++HPN+D +G + L ++ Q+ S
Sbjct: 78 PRGSPWEGGEYEVSVNFH-KWPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETS 136
Query: 286 LIKL 297
L KL
Sbjct: 137 LKKL 140
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 NILTWQGLIVPDNPP-YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPI 252
N+ W+ I + G +RI + F ++P PPK F+ ++HPN+ G VCL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 253 I 255
+
Sbjct: 97 L 97
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = +3
Query: 261 ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHS 428
++WKP+ Q++ + L+N P E P +AE + + ++R ++ K ++ K++
Sbjct: 101 KDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 NILTWQGLIVPDNPP-YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPI 252
N+ W+ I + G +RI + F ++P PPK F+ ++HPN+ G VCL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 253 I 255
+
Sbjct: 97 L 97
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = +3
Query: 261 ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHS 428
++WKP+ Q++ + L+N P E P +AE + + ++R ++ K ++ K++
Sbjct: 101 KDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 RLQKELNDIRQSGLKSFRDIQVDESNILT-WQ-GLIVPDNPPYNKGAFRIEINFPAEYPF 174
RL KEL ++ + SN L W+ G++ + Y F ++ F +YPF
Sbjct: 8 RLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGPQYPF 67
Query: 175 KPPKISF--KTKIYHPNIDEKGQVCLPII 255
P++ F +T HP+I G +CL I+
Sbjct: 68 NSPEVMFVGETIPAHPHIYSNGHICLSIL 96
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 70 ESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKT 201
E+NIL W+ +I+ PY G + ++ FP ++PFKPP I T
Sbjct: 34 ETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFKPPAILMLT 78
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 106 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNID-EKGQV 240
P + PY G F +++ FP YP P+I F+T I++ ++ GQV
Sbjct: 38 PADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQV 83
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 36.7 bits (81), Expect = 0.014
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPD-NPPYNKGAFRIEINFPAEYPFK 177
RL KE ++RQ Q E N+ W I + G + I FPA+YP K
Sbjct: 14 RLMKEAMELRQP--TEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPMK 71
Query: 178 PPKISFKTKIYHPNIDEKGQVCLPI 252
PP + T +++K VCL I
Sbjct: 72 PPNLILLTPNGRFELNKK--VCLSI 94
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 58 IQVDESNILT-WQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEK 231
++ D LT W I+ P PY + ++I YP +PP + F TK++ +++
Sbjct: 30 LEDDSDMTLTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQS 89
Query: 232 GQV 240
V
Sbjct: 90 NGV 92
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 73 SNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP--PKISF-KTKIYHPNIDEKG-QV 240
+N W G+I + G FR I+ P E+P P++ F ++ ++HP I K ++
Sbjct: 46 NNKFLWFGVIFVRKGIFGGGIFRFNIHIPLEFPDASDLPRVIFEQSNLFHPLICTKSKEL 105
Query: 241 CL 246
CL
Sbjct: 106 CL 107
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 255 SAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTK 419
+A + K TK + ++ L+ L N+ +PE P +A +E ++ AEEFT+
Sbjct: 97 AASDDKNVTKCVRFLKTLINLSNNDDPEMPDKAARVKELIRGVIYLETTAEEFTR 151
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 58 IQVDESNILTWQGLIV-PDNPPYNKGAFRIEINF-PAEYPFKPPKISFKTKIYHPNIDEK 231
+++DE+ L + +I P Y G F +IN P + P++ F T I+HPN+ +
Sbjct: 54 MRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLGKY 113
Query: 232 G 234
G
Sbjct: 114 G 114
>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
protein C02E11.1b protein.
Length = 1123
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 115 PPYNKGAFRIEINFPAEYPFKPPKISFK 198
P YNKG + ++++ PA Y F+P I K
Sbjct: 67 PVYNKGHYTLKVSAPAGYYFEPDSIEIK 94
>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
protein C02E11.1a protein.
Length = 1121
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 115 PPYNKGAFRIEINFPAEYPFKPPKISFK 198
P YNKG + ++++ PA Y F+P I K
Sbjct: 65 PVYNKGHYTLKVSAPAGYYFEPDSIEIK 92
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 318 VNDPEPEHPLRAELAEEF-LKDRKKFTKNAEEFTKKHSEK 434
+ND EPE P+R+ F L+D F K F KK SEK
Sbjct: 100 INDEEPEFPIRSTRLRSFDLRDGHIFDKG---FQKKPSEK 136
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 115 PPYNKGAFRIEINFPAEYPFKPPKISFKT 201
PPY + + + + P ++PF PP I+ KT
Sbjct: 46 PPYTE--YIVTVAIPPKFPFSPPAITCKT 72
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 363 EEFL-KDRKKFTKNAEEFTKKHSEKRPTD*-IHYKNFKFRFTA 485
EE L DR+ K E + + EKRP +H+K+++FRF A
Sbjct: 1864 EELLGPDREFVLKEVYELWEDYREKRPRICRLHFKDYQFRFFA 1906
>AC026301-11|AAK68891.2| 273|Caenorhabditis elegans Hypothetical
protein Y54F10BM.12 protein.
Length = 273
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 95 PCHVKMLDSSTCMSLKDFRPDCLMSLSS 12
PC+V D STCM L+DF +C L S
Sbjct: 29 PCNV---DDSTCMPLEDFDQNCTCILLS 53
>AC006832-2|AAO38580.1| 366|Caenorhabditis elegans Hypothetical
protein ZK355.2a protein.
Length = 366
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 261 LHYDGQAHLTLFINVRVVNLCFETNFRGFEWVFCWKVNL 145
LH Q+HL LF+ + CF + FEW+ W L
Sbjct: 78 LHTTSQSHLMLFLYYILAVHCFAGS---FEWLIGWNTQL 113
>AC006832-1|AAO38581.1| 376|Caenorhabditis elegans Hypothetical
protein ZK355.2b protein.
Length = 376
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 261 LHYDGQAHLTLFINVRVVNLCFETNFRGFEWVFCWKVNL 145
LH Q+HL LF+ + CF + FEW+ W L
Sbjct: 88 LHTTSQSHLMLFLYYILAVHCFAGS---FEWLIGWNTQL 123
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 243 PAHHSAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKK 422
P + + WKP + D V ++PE + P+ A+ E KD K + + K
Sbjct: 882 PVKNPVKKWKPPWEDDDEPTEEVKKPSEPEKKTPVLAKKEPEKPKDAPKVAAKPRDPSPK 941
Query: 423 HS--EKRP 440
+ EK P
Sbjct: 942 KAVPEKEP 949
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 276 ATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTK---KHSEKRPT 443
+++T V + L + ++ +P A EEF K +KK K++E K K KRPT
Sbjct: 1037 SSETTGVRRTLRSTQDNSDPLDASLATTIEEFRKTKKKDAKSSENRAKEKQKPMNKRPT 1095
>AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical
protein Y18H1A.7 protein.
Length = 369
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3
Query: 252 HSAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSE 431
+S EN + A T+Q I A + P P+ P AE E K K K + +K SE
Sbjct: 118 NSTEN-QDAPATEQTILNNRAAGSSPSPKSPRFAEKPSEIAKSTPKIRK-LVKISKICSE 175
Query: 432 KRP 440
K P
Sbjct: 176 KLP 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,789
Number of Sequences: 27780
Number of extensions: 307057
Number of successful extensions: 887
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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