Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0248
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.83 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.83 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.8  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 452 YLIC-RPFFTVFFGKFFCILCKFLPIFEKFF 363
           +++C  PFFT++  + FC  C    +F   F
Sbjct: 18  FILCWLPFFTMYLVRAFCRNCIHPTVFSVLF 48


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 452 YLIC-RPFFTVFFGKFFCILCKFLPIFEKFF 363
           +++C  PFFT++  + FC  C    +F   F
Sbjct: 466 FILCWLPFFTMYLVRAFCRNCIHPTVFSVLF 496


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 246 AHHSAENWKPATKTDQVIQALVA 314
           A H+A+ W+ A +  + ++A +A
Sbjct: 861 ARHAADKWRGAIEKRKTLRASIA 883


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 82  LTWQGLIVPDNPP 120
           L   G+I+PD+PP
Sbjct: 420 LPGNGVIIPDDPP 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,034
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)