Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0246
(667 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 75 3e-14
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 69 2e-12
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 68 6e-12
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 64 6e-11
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 56 2e-08
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 55 5e-08
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 52 3e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 8e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 8e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 8e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 50 1e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 50 1e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 1e-05
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 47 1e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 40 0.001
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 39 0.003
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.006
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 38 0.008
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.032
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 35 0.042
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 33 0.13
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.13
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.17
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.17
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.17
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.23
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.23
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.30
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 32 0.39
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.52
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.52
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 31 0.52
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.52
At3g31950.1 68416.m04046 hypothetical protein 31 0.69
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 31 0.91
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 31 0.91
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 0.91
At5g47430.1 68418.m05844 expressed protein 30 1.2
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.2
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.2
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.2
At4g17410.1 68417.m02607 expressed protein 30 1.2
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.2
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.2
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.2
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.6
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.6
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.1
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.1
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.1
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.1
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 2.1
At5g61670.2 68418.m07738 expressed protein 29 2.8
At5g61670.1 68418.m07737 expressed protein 29 2.8
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 2.8
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.8
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 3.7
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 3.7
At4g06479.1 68417.m00885 hypothetical protein 29 3.7
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.7
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 3.7
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 4.9
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 4.9
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 4.9
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 4.9
At4g06526.1 68417.m00938 hypothetical protein 28 6.4
At2g31850.1 68415.m03889 expressed protein 28 6.4
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 6.4
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 8.5
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 8.5
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 27 8.5
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 8.5
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 27 8.5
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 75.4 bits (177), Expect = 3e-14
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Frame = +1
Query: 256 GHFARDCKEE------------ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIA 393
GHFARDC ++ + CY C G GHIAR+CA + +PS CY C +GH+A
Sbjct: 207 GHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLA 265
Query: 394 RNCPEGGRESA--TQTCYNCNKSGHISRNC 477
R+C + G CY C K GH +R C
Sbjct: 266 RDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 62.1 bits (144), Expect = 3e-10
Identities = 45/141 (31%), Positives = 55/141 (39%), Gaps = 34/141 (24%)
Frame = +1
Query: 187 GGRGVAGFRFQSAT*EVLQVQPQGHFARDC------------KEEADRCYRCNGTGHIAR 330
GG G G R GHFARDC K D CY C GH+AR
Sbjct: 118 GGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVAR 177
Query: 331 ECAQSP------------DEPSCYNCNKTGHIARNCPE----GGRES---ATQTCYNCNK 453
+C Q CY C GH AR+C + G S + TCY+C
Sbjct: 178 DCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGG 237
Query: 454 SGHISRNCP---DGTKTCYVC 507
GHI+R+C ++ CY C
Sbjct: 238 VGHIARDCATKRQPSRGCYQC 258
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Frame = +1
Query: 295 CYRCNGTGHIARECA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 432
CY C GHI+++C +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 433 ---TCYNCNKSGHISRNC 477
CY C GH++R+C
Sbjct: 162 GNDGCYTCGDVGHVARDC 179
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 247
CY C TGHFAR+CT G + + C+ C
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTC 169
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRK 256
CY+C +GH AR+C Q R SG C+KC ++
Sbjct: 255 CYQCGGSGHLARDCDQ-----RGSGGGGNDNACYKCGKE 288
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Frame = +1
Query: 256 GHFARDCKEEA-------DRCYRCNGTGHIARECA 339
GH ARDC + + CY+C GH AREC+
Sbjct: 262 GHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 35.1 bits (77), Expect = 0.042
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 128 SSSVCYKCNRTGHFARECT 184
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 247
CY C GHFAR+CTQ C+ C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSC 235
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 134 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 247
S CY C GH +++C GG +R E C+ C
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNC 137
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKC 247
CY C GH AR+CTQ V + D + C+ C
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTC 203
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 436 CYNCNKSGHISRNCPDG 486
CYNC + GHIS++C G
Sbjct: 102 CYNCGELGHISKDCGIG 118
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 131 SSVCYKCNRTGHFAREC 181
S CY C GH AR+C
Sbjct: 229 SGTCYSCGGVGHIARDC 245
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/74 (44%), Positives = 40/74 (54%)
Frame = +1
Query: 256 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 435
GHFARDC C C GHIA EC E C+NC + GH+A NC G
Sbjct: 64 GHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG------I 113
Query: 436 CYNCNKSGHISRNC 477
C++C KSGH +R+C
Sbjct: 114 CHSCGKSGHRARDC 127
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 GHFARDCKEEADRCYRCNGTGHIARECAQSP----DEPSCYNCNKTGHIARNCPEGGRES 423
GH A +C E C+ C +GH AR+C+ S D C NC K GH+A +C +
Sbjct: 102 GHVASNCSNEGI-CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC------T 154
Query: 424 ATQTCYNCNKSGHISRNCPDGTKTCYVC 507
+ C NC SGHI+R+C + C +C
Sbjct: 155 NDKACKNCRTSGHIARDCRN-DPVCNIC 181
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +1
Query: 256 GHFARDCKEEADR------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 417
GH ARDC R C C GH+A +C ++ +C NC +GHIAR+C
Sbjct: 121 GHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN--- 174
Query: 418 ESATQTCYNCNKSGHISRNCPDG 486
C C+ SGH++R+CP G
Sbjct: 175 ---DPVCNICSISGHVARHCPKG 194
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +1
Query: 253 QGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 411
QGH A DC + C C +GHIAR+C ++P C C+ +GH+AR+CP+G
Sbjct: 146 QGHLAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKG 194
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +1
Query: 283 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 462
+ + C C GH AR+C+ + C NC GHIA C +A C+NC + GH
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPGH 103
Query: 463 ISRNCPDGTKTCYVC 507
++ NC C+ C
Sbjct: 104 VASNC-SNEGICHSC 117
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 134 SVCYKCNRTGHFARECTQGGV 196
++C C R GHFAR+C+ V
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV 75
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 128 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFK 244
+ +C+ C ++GH AR+C+ SR +G R CFK
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK 145
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 67.7 bits (158), Expect = 6e-12
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 19/93 (20%)
Frame = +1
Query: 256 GHFARDCKEEA--------DRCYRCNGTGHIARECAQSPDEP------SCYNCNKTGHIA 393
GHFARDC++ CY C G GHIA+ C +CY C TGH+A
Sbjct: 205 GHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLA 264
Query: 394 RNCPEGGRESA-----TQTCYNCNKSGHISRNC 477
R+C G S+ + C+ C K GH +R C
Sbjct: 265 RDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Frame = +1
Query: 289 DRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 438
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 439 YNCNKSGHISRNC 477
Y C +GH++R+C
Sbjct: 255 YECGGTGHLARDC 267
Score = 57.2 bits (132), Expect = 9e-09
Identities = 34/98 (34%), Positives = 42/98 (42%), Gaps = 27/98 (27%)
Frame = +1
Query: 295 CYRCNGTGHIARECAQSPDEPS---------CYNCNKTGHIARNCPEG----------GR 417
CY C GH AR+C QS S CY+C + GH+A++C G GR
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 418 ESATQTCYNCNKSGHISRNCPD--------GTKTCYVC 507
S CY C GH +R+C G TCY C
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTC 229
Score = 51.2 bits (117), Expect = 6e-07
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 25/111 (22%)
Frame = +1
Query: 232 EVLQVQPQGHFARDCKEEADR-----CYRCNGTGHIAREC--------------AQSPDE 354
+ ++V G + + KE + R C+ C GH+A++C +S E
Sbjct: 70 KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129
Query: 355 PSCYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGT 489
CY C GH AR+C + GG + CY+C + GH++++C G+
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 180
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRK 256
CY+C TGH AR+C + G S SG KCF C ++
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKE 290
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 247
CY C GHFAR+C Q G + G R C+ C
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSC 166
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
CY C GHFAR+C Q G
Sbjct: 198 CYMCGGVGHFARDCRQNG 215
Score = 32.3 bits (70), Expect = 0.30
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 131 SSVCYKCNRTGHFARECT 184
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSG 214
CY C GH A++C G +R G
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGG 187
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 134 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 247
S CY C GH A+ CT + S G R C++C
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYEC 257
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +2
Query: 128 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKC 247
S C+ C GH A++C G G S G R+ +C+ C
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMC 135
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 64.5 bits (150), Expect = 6e-11
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Frame = +1
Query: 259 HFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCPEG 411
H A+ C E+++ C +C GH + C + +E S CYNC TGH +CP
Sbjct: 84 HIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYP 143
Query: 412 GRESATQ--TCYNCNKSGHISRNCPDGTKTCY 501
+ T+ +C+ C GHIS+NCP+ Y
Sbjct: 144 MEDGGTKFASCFICKGQGHISKNCPENKHGIY 175
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +1
Query: 307 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 486
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 487 T------KTCYVC 507
K CY C
Sbjct: 118 NNESSEKKLCYNC 130
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Frame = +1
Query: 295 CYRCNGTGHIARECAQSPDEPS------------------CYNCNKTGHIARNCPEG--- 411
CYRC GH C + +E + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 412 ----GRESATQTCYNCNKSGHISRNCPDGTK 492
GRES T CY CN SGH +R CP+ ++
Sbjct: 347 STSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 253 QGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE- 420
QGH + +C R C+ C H A++C++ D CY C KTGH A++CP+ +
Sbjct: 174 QGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNG 230
Query: 421 SATQTCYNCNKSGH 462
S C C GH
Sbjct: 231 SKGAVCLRCGDFGH 244
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +1
Query: 283 EADRCYRCNGTGHIARECAQS---------PDEPSCYNCNKTGHIARNCPEGGRES 423
EA CYRC GH AREC S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 295 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 471
CY C GH + C + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 472 NCPDGTK 492
+CPD K
Sbjct: 222 DCPDKYK 228
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 11/42 (26%)
Frame = +1
Query: 253 QGHFARDC-----------KEEADRCYRCNGTGHIARECAQS 345
+GHFAR+C +E CYRCNG+GH AREC S
Sbjct: 333 EGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 131 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCN 250
+S CY+C GHFAREC +S G + C++CN
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCN 362
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 358 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 507
SCY+C + GH + NCP + + C+ C H ++ C G CY+C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYIC 213
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 128 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNRKDT 262
S ++CY+CN +GHFAREC VS RD + K K N++++
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENS 399
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 54.8 bits (126), Expect = 5e-08
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 36/117 (30%)
Frame = +1
Query: 253 QGHFARDCKEEADR-----------CYRCNGTGHIAREC-AQSPD---EPS--------- 360
+GH+ARDC ++D C++C GH +R+C AQS + EP
Sbjct: 245 EGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSG 304
Query: 361 -CYNCNKTGHIARNCP--------EGGRESATQT---CYNCNKSGHISRNCPDGTKT 495
CY C K GH +R+C + G+ +T + CY C K+GH SR+C +T
Sbjct: 305 ECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQT 361
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 20/81 (24%)
Frame = +1
Query: 295 CYRCNGTGHIAREC-AQSPDEP--------SCYNCNKTGHIARNCP--------EGGR-- 417
CY+C GH AR+C QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 418 -ESATQTCYNCNKSGHISRNC 477
S++ CY C K GH SR+C
Sbjct: 299 SSSSSGECYKCGKQGHWSRDC 319
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 122 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNR 253
A + + CYKC + GH+AR+CT V D+G + CFKC +
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGK 275
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 95 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 232
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 35.9 bits (79), Expect = 0.024
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 128 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNR 253
SS CYKC + GH++R+CT Q SG + C+KC +
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGK 347
Score = 35.5 bits (78), Expect = 0.032
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +2
Query: 95 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNRK 256
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC ++
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
Score = 35.5 bits (78), Expect = 0.032
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +1
Query: 220 SAT*EVLQVQPQGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 399
S++ E + QGH++RDC ++ +G A+ + + D CY C K GH +R+
Sbjct: 301 SSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQ---AKSTSSTGD---CYKCGKAGHWSRD 354
Query: 400 CPEGGRESAT 429
C + + T
Sbjct: 355 CTSPAQTTNT 364
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +1
Query: 292 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 456
+CY CN GH+ C P SCY C + GH C +S + +C+ C +
Sbjct: 54 KCYVCNSLGHL---CCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGRE 110
Query: 457 GHISRNCPDGTKTCY 501
GH C + C+
Sbjct: 111 GHFEHQCHNSFSVCF 125
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Frame = +1
Query: 280 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 441
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 442 NCNKSGHISRNC-----PDGTKTCYVC 507
C + GH C + +C++C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFIC 107
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
Frame = +1
Query: 295 CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC--------PEGGRESATQTCY 441
CYRC GH C + D+ PSC+ C + GH C PE E Q
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPD 138
Query: 442 NCN----------KSGHISRNCPDGTKTCY 501
+ + + GH CPD + C+
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCF 168
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Frame = +1
Query: 190 GRGVAGFRFQSAT*EVLQVQPQGHFARDCKEEADRCYR--CNGTGHIARECAQSPDEPS- 360
G + RFQ T E + +GHF C + + C++ G I+ +
Sbjct: 136 GPDSSSVRFQENTRE----EEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGR 191
Query: 361 -----CYNCNKTGHIARNCPEGGR 417
CY C GHIAR+CP +
Sbjct: 192 ETRRLCYECKGKGHIARDCPNSSQ 215
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +1
Query: 316 GHIARECAQSPDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHISRNC 477
GH +C PD S C+ + G I+ N +T CY C GHI+R+C
Sbjct: 154 GHFEHQC---PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Query: 478 PDGTK 492
P+ ++
Sbjct: 211 PNSSQ 215
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 80 YISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 199
+IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 177 FISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 8e-07
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +1
Query: 154 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPQGHFARDCKEE---ADRCYRCNGTGHI 324
P A AR + GR G R T E + P+G D + A RC+ C GH
Sbjct: 13 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 69
Query: 325 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 444
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 346 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 492
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Frame = +1
Query: 379 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 507
T +R P G R+ ++ C+NC GH +R+C D CY C
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRC 85
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQG 190
C+ C GH+AR+CT G
Sbjct: 60 CFNCGVDGHWARDCTAG 76
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 8e-07
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +1
Query: 154 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPQGHFARDCKEE---ADRCYRCNGTGHI 324
P A AR + GR G R T E + P+G D + A RC+ C GH
Sbjct: 24 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 80
Query: 325 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 444
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 81 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 346 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 492
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Frame = +1
Query: 379 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 507
T +R P G R+ ++ C+NC GH +R+C D CY C
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRC 96
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQG 190
C+ C GH+AR+CT G
Sbjct: 71 CFNCGVDGHWARDCTAG 87
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 8e-07
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +1
Query: 154 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPQGHFARDCKEE---ADRCYRCNGTGHI 324
P A AR + GR G R T E + P+G D + A RC+ C GH
Sbjct: 54 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 110
Query: 325 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 444
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 346 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 492
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Frame = +1
Query: 379 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 507
T +R P G R+ ++ C+NC GH +R+C D CY C
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRC 126
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQG 190
C+ C GH+AR+CT G
Sbjct: 101 CFNCGVDGHWARDCTAG 117
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +1
Query: 154 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPQG---HFARDCKEEADRCYRCNGTGHI 324
P A AR + GR G R T E + P+G + +R + RC+ C GH
Sbjct: 54 PRDADDARYYLDGRDFDGSRI---TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 110
Query: 325 ARECAQSPDEPSCYNCNKTGHIARNC 402
AR+C + CY C + GHI RNC
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 346 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 477
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 256 GHFARDCK--EEADRCYRCNGTGHIARECAQSP 348
GH+ARDC + ++CYRC GHI R C SP
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Frame = +1
Query: 379 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 507
T +R P G R++ ++ C+NC GH +R+C D CY C
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRC 126
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 131 SSVCYKCNRTGHFARECTQG 190
S C+ C GH+AR+CT G
Sbjct: 98 SGRCFNCGVDGHWARDCTAG 117
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +1
Query: 154 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPQG---HFARDCKEEADRCYRCNGTGHI 324
P A AR + GR G R T E + P+G + +R + RC+ C GH
Sbjct: 13 PRDADDARYYLDGRDFDGSRI---TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 69
Query: 325 ARECAQSPDEPSCYNCNKTGHIARNC 402
AR+C + CY C + GHI RNC
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 346 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 477
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 256 GHFARDCK--EEADRCYRCNGTGHIARECAQSP 348
GH+ARDC + ++CYRC GHI R C SP
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Frame = +1
Query: 379 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 507
T +R P G R++ ++ C+NC GH +R+C D CY C
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRC 85
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 131 SSVCYKCNRTGHFARECTQG 190
S C+ C GH+AR+CT G
Sbjct: 57 SGRCFNCGVDGHWARDCTAG 76
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +1
Query: 295 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 474
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 475 CPDG 486
C G
Sbjct: 195 CTSG 198
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +1
Query: 187 GGRGVAGFRFQSAT*EVLQVQPQGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 360
GGRG G + GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 361 CYNCNKTGHIARNCPEGG 414
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 36.3 bits (80), Expect = 0.018
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
C+KC GH AREC+QGG
Sbjct: 138 CFKCGEPGHMARECSQGG 155
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 382 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 486
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 349 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPD 483
D +CY C K GH AR+C + +A TCY C++ GH S CP+
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPN 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +1
Query: 295 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 456
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 457 GH 462
H
Sbjct: 96 DH 97
Score = 31.9 bits (69), Expect = 0.39
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 140 CYKCNRTGHFAREC 181
CYKC + GHFAR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 265 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCY 441
AR E+ + + N R + + C NC + GH CPE G + + C
Sbjct: 234 ARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCR 293
Query: 442 NCNKSGHISRNCP 480
C GH R CP
Sbjct: 294 GCGGKGHNRRTCP 306
Score = 33.9 bits (74), Expect = 0.098
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 27/101 (26%)
Frame = +1
Query: 259 HFARDCKEEADRCYRCNGTG---HIARECAQSPD---------EPSCYNCNKTGHIARNC 402
H+ + ADR +RC G G H R C +S C C + GH +R C
Sbjct: 277 HYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTC 336
Query: 403 --PEG------GRESA-------TQTCYNCNKSGHISRNCP 480
P G G S T C C K GH R CP
Sbjct: 337 RKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCP 377
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +1
Query: 244 VQPQGHFARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP-EGG 414
+ P G A + +EE C+ C GH R+C + D + + +N G
Sbjct: 585 IMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNG 637
Query: 415 RESATQTCYNCNKSGHISRNCPD 483
RE A+ C C + H + CP+
Sbjct: 638 REEASSLCIRCFQLSHWAATCPN 660
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 379 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT 495
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRDLI---CFYCGKKGHCLRDCLEVTDT 623
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 125 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 229
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 349 DEPSCYNCNKTGHIARNCPEG 411
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 283 EADRCYRCNGTGHIAREC 336
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 409 GGRESATQT--CYNCNKSGHISRNCPDG 486
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 125 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 229
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 349 DEPSCYNCNKTGHIARNCPEG 411
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 283 EADRCYRCNGTGHIAREC 336
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 409 GGRESATQT--CYNCNKSGHISRNCPDG 486
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 229
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 31.5 bits (68), Expect = 0.52
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 409 GGRESATQTCYNCNKSGHISRNC 477
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.69
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 292 RCYRCNGTGHIAREC 336
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 361 CYNCNKTGHIARNCPEGG 414
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +1
Query: 295 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 453
CY+C GH+AR+C++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 454 SGHISRNCPDG 486
SGH +R+C G
Sbjct: 191 SGHFARDCTSG 201
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 358 SCYNCNKTGHIARNCPEGGR 417
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
Score = 35.9 bits (79), Expect = 0.024
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 134 SVCYKCNRTGHFARECTQGG 193
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
Score = 31.1 bits (67), Expect = 0.69
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 409 GGRESATQTCYNCNKSGHISRNCPDG 486
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 140 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 229
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 412 GRESATQTCYNCNKSGHISRNC 477
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 292 RCYRCNGTGHIAREC 336
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 361 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 480
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 35.1 bits (77), Expect = 0.042
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRKDTLRGIARKRLTVATD 304
C+KC + GHFAREC SRD G R K + + KD G R D
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG-GRFSSKDDRYSSKDDRYGAKDDRYGAKED 171
Score = 30.7 bits (66), Expect = 0.91
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +1
Query: 361 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 492
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +1
Query: 433 TCYNCNKSGHISRNCPDGT---KTCYVC 507
TCY+C + HI+ +CP T K+C++C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFIC 171
Score = 31.5 bits (68), Expect = 0.52
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 358 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 477
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +1
Query: 361 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 486
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +1
Query: 295 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 429
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 367 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 492
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 232 EVLQVQPQGHFARDCKEEADRCYRCNGTGHIARECAQSPDE 354
+V Q++ G ++ K D C++C GH AR+C + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.5 bits (68), Expect = 0.52
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.69
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 352 EPSCYNCNKTGHIARNCPEGG 414
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 232 EVLQVQPQGHFARDCKEEADRCYRCNGTGHIARECAQSPDE 354
+V Q++ G ++ K D C++C GH AR+C + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.5 bits (68), Expect = 0.52
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.69
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 352 EPSCYNCNKTGHIARNCPEGG 414
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 292 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 414
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.23
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGG 193
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.30
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 352 EPSCYNCNKTGHIARNCPEGG 414
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 409 GGRESATQTCYNCNKSGHISRNCP 480
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 DRCYRCNGTGHIAREC 336
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 415 RESATQTCYNCNKSGHISRNCPD 483
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 358 SCYNCNKTGHIARNCPE 408
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 348 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 491
G +V+ LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.52
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 403 PEGGRESATQTCYNCNKSGHISRNC 477
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.91
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 137 VCYKCNRTGHFAREC 181
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 361 CYNCNKTGHIARNC 402
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 295 CYRCNGTGHIAREC 336
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 349 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 456
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 280 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 414
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.5 bits (68), Expect = 0.52
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 418 ESATQTCYNCNKSGHISRNCP 480
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQGGVVS 202
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +1
Query: 361 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 474
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 352 EPSCYNCNKTGHIARNCPEGGRESATQ 432
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 0.91
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 433 TCYNCNKSGHISRNCPDGTKTCYV 504
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 238 LQVQPQGHFARDCKEEADRCYRCNGTGHIAREC 336
+Q QG K CYRC GHIA+ C
Sbjct: 208 MQATTQGKCTFQTKHVELTCYRCKQEGHIAKIC 240
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +1
Query: 301 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 468
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 469 RNCP 480
CP
Sbjct: 327 MYCP 330
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 30.7 bits (66), Expect = 0.91
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 348 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRKPGHIS 527
G +V+ Q DGPH ++R G AD+L Q P L + +H+ + G
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHRAEEMMHTKGGSE 649
Query: 528 REXDE 542
E +E
Sbjct: 650 GENEE 654
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 30.7 bits (66), Expect = 0.91
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 348 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRKPGHIS 527
G +V+ Q DGPH ++R G AD+L Q P L + +H+ + G
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHRAEEMMHTKGGSE 649
Query: 528 REXDE 542
E +E
Sbjct: 650 GENEE 654
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 0.91
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 268 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 444
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 445 CNKS 456
C S
Sbjct: 181 CKSS 184
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 301 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 414
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 137 VCYKCNRTGHFARECTQGG 193
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 427 TQTCYNCNKSGHISRNCPD 483
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 361 CYNCNKTGHIARNCPEGG 414
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 110 SKPIAMSSSVCYKCNRTGHFAREC 181
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 289 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 462
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 463 ISRNC 477
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 137 VCYKCNRTGHFARECTQGG 193
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 322 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 474
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 280 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 417
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 349 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 492
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 280 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 417
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 349 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 492
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 427 TQTCYNCNKSGHISRNCPD-GTKTC 498
T+ C +C+ +GH SR CP G TC
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTC 26
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 277 KEEADRCYRCNGTGHIARECAQSP 348
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 140 CYKCNRTGHFARECTQG 190
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 382 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 480
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 349 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 480
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 349 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 480
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 277 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 456
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 457 GHIS 468
G ++
Sbjct: 128 GSLT 131
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 322 IARECAQSP-DEPSCYNCNKTGHIARNCP 405
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 6.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 140 CYKCNRTGHFAREC 181
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +1
Query: 277 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 432
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 433 TCYNCNKSGHISRNCP 480
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +1
Query: 277 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 432
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 433 TCYNCNKSGHISRNCP 480
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +1
Query: 280 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 450
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 451 KSGHISRNCP 480
G + CP
Sbjct: 256 GKGKLP--CP 263
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 436 CYNCNKSGHISRNCPDGTKT 495
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 361 CYNCNKTGHIARNCP 405
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 125 MSSSVCYKCNRTGHFAREC 181
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 277 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 456
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 457 GHISRNCP 480
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 277 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 456
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 457 GHISRNCP 480
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +1
Query: 295 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 402
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 3.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 430 QTCYNCNKSGHISRNCPD 483
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 430 QTCYNCNKSGHISRNCP 480
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 430 QTCYNCNKSGHISRNCP 480
+ CY C + GH+S CP
Sbjct: 479 RNCYECGEKGHLSTACP 495
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 472 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 386
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 367 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 474
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 367 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 474
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 367 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 474
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 98 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 208
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 280 EEADRCYRCNGTGHIARECAQS 345
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 349 DEPSCYNCNKTGHIARNCPE 408
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 436 CYNCNKSGHISRNCP 480
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +1
Query: 295 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 405
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = -1
Query: 484 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGS 341
R+D G G + C S S P S SCC C+ TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 289 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 459
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 460 HISRNC 477
IS C
Sbjct: 275 EISTPC 280
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +1
Query: 304 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 405
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 372 QQDGP-HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRK 512
QQ+ P + +L R A VCD L L +R HL + + H DVLR K
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALK 678
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -1
Query: 505 TRSTSWCRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSC 374
T + C C RC CS S S T PP S+ C P C
Sbjct: 321 TVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPP--GSIPC-PLC 361
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 322 IARECAQSPDEPS-CYNCNKTGHIARNC 402
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 274 CKEEADRCYRCNGTGHIARECA 339
C EE +R CNG G +A E A
Sbjct: 827 CHEENNRVMNCNGRGSVAGEMA 848
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,341,585
Number of Sequences: 28952
Number of extensions: 262099
Number of successful extensions: 1253
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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