Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0245
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    29   3.9  
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    29   3.9  
U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell l...    28   6.8  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    28   6.8  
AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.     28   6.8  
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical
           protein C08B6.11 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 14  FSYCFV*FFISSKLQSCVGADTHTFFFLIPYIGLR 118
           +S  F+ FFI+  L  C+    + +F+++PYIGL+
Sbjct: 339 WSIVFLIFFIAFPL-ICIFITLYFYFYVMPYIGLK 372


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
           receptor T17A3.1 protein.
          Length = 1083

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 299 IFHEPAMYNVLRIQWSLTANHLNLTCMKKQYNVIFQLL 412
           I  EPA + V   Q+ L   HLN+ C+     ++  LL
Sbjct: 467 IIREPASFKVFGHQFYLLGTHLNIDCVSTSIPLVDALL 504


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 1
           protein.
          Length = 1083

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 299 IFHEPAMYNVLRIQWSLTANHLNLTCMKKQYNVIFQLL 412
           I  EPA + V   Q+ L   HLN+ C+     ++  LL
Sbjct: 467 IIREPASFKVFGHQFYLLGTHLNIDCVSTSIPLVDALL 504


>U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform c protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 38  FISSKLQSCVGADTHTFFFLIPYIGLRPTD 127
           FI+    +C  A TH  +  IPY+GL PTD
Sbjct: 169 FITKHSSTC--ALTHIDYASIPYLGLLPTD 196


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 38  FISSKLQSCVGADTHTFFFLIPYIGLRPTD 127
           FI+    +C  A TH  +  IPY+GL PTD
Sbjct: 169 FITKHSSTC--ALTHIDYASIPYLGLLPTD 196


>AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 38  FISSKLQSCVGADTHTFFFLIPYIGLRPTD 127
           FI+    +C  A TH  +  IPY+GL PTD
Sbjct: 169 FITKHSSTC--ALTHIDYASIPYLGLLPTD 196


>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical
           protein W07E11.1 protein.
          Length = 2207

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 521 CGVCGLCLSVFILTRNYNAVQLFSFIDE 438
           C VC L  S  +    +N  QLF F D+
Sbjct: 224 CYVCSLSTSTIVYKGQFNTHQLFKFYDD 251


>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical
           protein W07E11.1 protein.
          Length = 2207

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 521 CGVCGLCLSVFILTRNYNAVQLFSFIDE 438
           C VC L  S  +    +N  QLF F D+
Sbjct: 224 CYVCSLSTSTIVYKGQFNTHQLFKFYDD 251


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 377 MKKQYNVIFQLLFIMLSSLATRL*TRTIAQH 469
           +   Y +++  L+IML S+ TR+  R+  +H
Sbjct: 211 LSTSYYILYAQLYIMLKSIKTRISNRSFKKH 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,387,366
Number of Sequences: 27780
Number of extensions: 254181
Number of successful extensions: 449
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)