Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0244
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   6.5  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   8.6  

>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 514 YTTWPAYDPFF 482
           Y+ W AYDPFF
Sbjct: 127 YSEWKAYDPFF 137


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 419 TVRSTLTKTLTRRFPYKESKEEKWIICWPSRITYLXXGTPLHXPGRRPAN 568
           T++S L K     +   E  E   ++ + +  TY   GTP+H  GR+  N
Sbjct: 305 TIQSKLNKN---EYSTLEEFESDILLMFNNCFTYNPPGTPVHVMGRQLEN 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,505
Number of Sequences: 5004
Number of extensions: 43380
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)