Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0244
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49925| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_24266| Best HMM Match : Transposase_35 (HMM E-Value=1.2) 28 5.1
SB_12987| Best HMM Match : Transposase_35 (HMM E-Value=1.2) 28 5.1
SB_42801| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_42142| Best HMM Match : Transposase_35 (HMM E-Value=1.2) 28 5.1
SB_31167| Best HMM Match : Transposase_35 (HMM E-Value=1.2) 28 5.1
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043) 28 5.1
SB_42681| Best HMM Match : Transposase_35 (HMM E-Value=1.2) 28 6.7
SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_34246| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_49925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 353 HNLGDIVQKVRTI*ASLSINK*TVRSTLTKTLTRRF--PYKESKEEKWIICWPSRI 514
HNL D + V+ I +++ K + + T R+ PYK+ E K ++C ++
Sbjct: 55 HNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVCQTGKV 110
>SB_24266| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
Length = 151
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 353 HNLGDIVQKVRTI*ASLSINK*TVRSTLTKTLTRRF--PYKESKEEKWIICWPSRI 514
HNL D + V+ I +++ K + + T R+ PYK+ E K ++C ++
Sbjct: 18 HNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVCQTGKV 73
>SB_12987| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
Length = 219
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 353 HNLGDIVQKVRTI*ASLSINK*TVRSTLTKTLTRRF--PYKESKEEKWIICWPSRI 514
HNL D + V+ I +++ K + + T R+ PYK+ E K ++C ++
Sbjct: 113 HNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVCQTGKV 168
>SB_42801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 353 HNLGDIVQKVRTI*ASLSINK*TVRSTLTKTLTRRF--PYKESKEEKWIICWPSRI 514
HNL D + V+ I +++ K + + T R+ PYK+ E K ++C ++
Sbjct: 59 HNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVCQTGKV 114
>SB_42142| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
Length = 265
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 353 HNLGDIVQKVRTI*ASLSINK*TVRSTLTKTLTRRF--PYKESKEEKWIICWPSRI 514
HNL D + V+ I +++ K + + T R+ PYK+ E K ++C ++
Sbjct: 132 HNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVCQTGKV 187
>SB_31167| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
Length = 169
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 353 HNLGDIVQKVRTI*ASLSINK*TVRSTLTKTLTRRF--PYKESKEEKWIICWPSRI 514
HNL D + V+ I +++ K + + T R+ PYK+ E K ++C ++
Sbjct: 85 HNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVCQTGKV 140
>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
Length = 831
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 353 HNLGDIVQKVRTI*ASLSINK*TVRSTLTKTLTRRF--PYKESKEEKWIICWPSRI 514
HNL D + V+ I +++ K + + T R+ PYK+ E K ++C ++
Sbjct: 374 HNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVCQTGKV 429
>SB_42681| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
Length = 144
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 353 HNLGDIVQKVRTI*ASLSINK*TVRSTLTKTLTRRF--PYKESKEEKWIICWPSRI 514
HNL D + V+ I +++ K + + T R+ PYK+ E K ++C ++
Sbjct: 10 HNLEDYLTDVKNIDHRIALTKCRLTNHKLAIETVRYEKPYKKPNERKCLVCQTGKV 65
>SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 353 HNLGDIVQKVRTI*ASLSINK*TVRSTLTKTLTRRF--PYKESKEEKWIIC 499
HNL D + V+ I +++ K + + T R+ PYK+ E K ++C
Sbjct: 341 HNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKQPNERKCLVC 391
>SB_34246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 353 HNLGDIVQKVRTI*ASLSINK*TVRSTLTKTLTRRF--PYKESKEEKWIIC 499
HNL D + V+ I +++ K + + T R+ PYK+ E K ++C
Sbjct: 80 HNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVC 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,380,108
Number of Sequences: 59808
Number of extensions: 286361
Number of successful extensions: 501
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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