Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0244
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81110-9|CAB03261.2|  353|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81094-8|CAB03155.2|  353|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    28   4.5  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    28   4.5  

>Z81110-9|CAB03261.2|  353|Caenorhabditis elegans Hypothetical
           protein T01D3.1 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 255 YLHNVTCVDQLSFNCFNSL 311
           + HNVTC+D L  +C   L
Sbjct: 49  HFHNVTCIDALDIHCLKEL 67


>Z81094-8|CAB03155.2|  353|Caenorhabditis elegans Hypothetical
           protein T01D3.1 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 255 YLHNVTCVDQLSFNCFNSL 311
           + HNVTC+D L  +C   L
Sbjct: 49  HFHNVTCIDALDIHCLKEL 67


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 426 GRRLLKHSPEGFHIKKVRKKNGSYAG 503
           G +LLK +PEG  ++KV+K   S  G
Sbjct: 445 GEKLLKQTPEGLDLEKVKKDLCSIVG 470


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 426 GRRLLKHSPEGFHIKKVRKKNGSYAG 503
           G +LLK +PEG  ++KV+K   S  G
Sbjct: 403 GEKLLKQTPEGLDLEKVKKDLCSIVG 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,512,916
Number of Sequences: 27780
Number of extensions: 234563
Number of successful extensions: 440
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)