Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0244
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 520 VCYTTWPAYDPFFFLTFFIW 461
           VCY  W  + P F + +  W
Sbjct: 218 VCYGIWVYFVPLFLIIYSYW 237


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 520 VCYTTWPAYDPFFFLTFFIW 461
           VCY  W  + P F + +  W
Sbjct: 94  VCYGIWVYFVPLFLIIYSYW 113


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 215 TCQSKIIFAISEGDGMKLFTLVH 147
           TC SK     ++ DG+  +TL H
Sbjct: 439 TCNSKTKCCFAQDDGLCPYTLKH 461


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 408  LINRQLGRRLLKHSPEGFHIKKV 476
            L+N QLG+  L    EGF  K V
Sbjct: 1039 LVNDQLGQLYLDLEVEGFETKLV 1061


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,896
Number of Sequences: 438
Number of extensions: 2903
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)