Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0243
         (769 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q52006 Cluster: ORF6; n=2; root|Rep: ORF6 - Plasmid pIP501    34   3.4  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    34   4.5  

>UniRef50_Q52006 Cluster: ORF6; n=2; root|Rep: ORF6 - Plasmid pIP501
          Length = 450

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
 Frame = -3

Query: 686 YYNYYPIFFVDVLINI----KINTYVDFNNLMHYDAE*IMFLHVSVPCANLPPLRQQMLK 519
           Y ++Y +  V+ L+ +    K NTY+   N++  D   ++F++ +    NLP   ++ L+
Sbjct: 75  YADFYKLDIVNRLLEMNVLEKTNTYLAMQNILLKDTRDLLFIYKADHFDNLPYSTKEELE 134

Query: 518 KFAAIICVKY--FTIDKF 471
           ++   IC  +  FT++K+
Sbjct: 135 QWKNFICSFFGKFTLEKY 152


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 375 KWMEELTAHLVLSGYCGL*TSTT*MPPPNLRHEF 274
           +W++ELTAHLVLSGY           PP  R++F
Sbjct: 158 RWVDELTAHLVLSGYWSPRHLYDVNAPPTSRYKF 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,130,013
Number of Sequences: 1657284
Number of extensions: 11850955
Number of successful extensions: 21947
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21945
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)