Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0243
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    28   1.7  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   5.2  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   6.8  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   9.0  

>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 42  LI*SFYIEFIDKIRKHYFKHASFTFLLSFSISN 140
           LI SFYI+ +D +R  + K  SFT +L   + N
Sbjct: 711 LITSFYIKVLDCVRIRFRKLMSFTRILKAHLEN 743


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 332 TVVYRHQQHECHHPT*DMNSKSQFLHTTSTSP 237
           TV+Y  +  +C      MNS S  ++ TSTSP
Sbjct: 20  TVLYDRRALDCDSEMSLMNSLSHLVYLTSTSP 51


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 352 PLSVEWLLWSIDINNMNATTQLET*ILNLNFYIQRLPH 239
           PL+ E++ WS+++     TT+L+   L  N    RL H
Sbjct: 486 PLANEFIPWSLEVEKQPVTTKLKVPNLVRNDKFVRLWH 523


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 599 YDAE*IMFLHVSVPCANLPPLR 534
           Y A  + FL+ S+P A+LPPLR
Sbjct: 214 YPAIVVPFLNGSLPQADLPPLR 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,722
Number of Sequences: 5004
Number of extensions: 53918
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)