Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0243
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   5.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   9.5  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 677 YYPIFFVDV--LINIKINTYVDFNNLMHYDAE*IMFLH 570
           Y  + F+ +  LI   +N YV  + LM  DA   MF+H
Sbjct: 140 YMQLVFMGIVELIMFTVNKYVGEHLLMTVDAGDSMFVH 177


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 1  NEYKAGPCVKVLVSLFR 51
          +E++  PC K+L SL R
Sbjct: 1  DEFRCEPCNKILTSLTR 17


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 152 DGRTSCESARVGTTPLFSA 208
           DGR SC   R  T P+  A
Sbjct: 62  DGRVSCPVLRAYTCPICGA 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,147
Number of Sequences: 438
Number of extensions: 3909
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)