Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0241
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.1  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    26   4.1  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   4.1  
SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase...    25   7.1  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   7.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.4  

>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 86  LNLTSFYRDLELLLTLIFQFRYTDPRWTIN 175
           LN+    + L+++  LIFQF  T P W  N
Sbjct: 74  LNIALRIQSLKIIKILIFQFYSTKPLWDKN 103


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 502 IYRTDHRTLWYLLSVQKKPVFPYS*FPFQ---VWYLFVN 395
           +Y   + T W L S+ + P+ PY  F  Q   +W +F N
Sbjct: 615 LYGESNPTTWGLWSMIRGPLAPYQKFSDQNDYIWLIFTN 653


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 29  TAGTVILIVNSTVMVA*EYLNLTSFYRDLELLLTL 133
           TAG ++LI+N+++    +YL + +      LL+T+
Sbjct: 260 TAGLIVLIINASITFVSDYLWVIAMLMTSPLLVTV 294


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 510 HILSTVPTTEHCGTCYQSKKNLYFLILNFHFKCGICLL 397
           H LS++P T   G CY+S     FLI   H K  I +L
Sbjct: 322 HELSSIPWT---GLCYESGFANTFLISGIHSKEAISIL 356


>SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 617 TLNLYGKHICSSRSPVIYTSNPKSVIIEKRTGHRAPTSYLP 495
           T N  G  I +     I+T+NP+   I KR  +     + P
Sbjct: 85  TSNQQGNDIGTQYRSAIFTTNPEQATIAKRVMNEVQAKHYP 125


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 127 DLDISVQIYRPQVDNQYYNVERVSWQKKG 213
           D+D+S+   R +  N  + V +V+W   G
Sbjct: 630 DVDVSINRIRKEKSNTIFTVPKVNWDDIG 658


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -3

Query: 510  HILSTVPTTEHCGTCYQSKKNLYFLILNFHFKCGICLLMFSFQCFAY 370
            H+L  +     C   Y   +N  FLIL+  +   IC+ ++    + +
Sbjct: 1281 HLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYF 1327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,130
Number of Sequences: 5004
Number of extensions: 54789
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)