Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0241
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1242 + 25113464-25114150                                         32   0.34 
08_02_1111 + 24377268-24377444,24377543-24377630,24378072-243781...    28   7.4  

>07_03_1242 + 25113464-25114150
          Length = 228

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 510 HILSTVPTTEHCGTCYQSKKNLYFLILNFHFKCGICLLMFSFQC 379
           H+L+ VP    C  C++           +H++CG+CL M    C
Sbjct: 133 HVLNLVPARGECAACHRDCSI-------WHYRCGLCLFMLHIGC 169


>08_02_1111 +
           24377268-24377444,24377543-24377630,24378072-24378157,
           24378358-24378511,24378723-24378883,24378964-24379632,
           24379860-24380058,24380188-24380405,24380578-24380755,
           24380859-24381358
          Length = 809

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -3

Query: 339 WIWTLEWRPPPVLSTD 292
           W++++EW+PP +L+ D
Sbjct: 319 WVYSVEWQPPTLLTDD 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,415,854
Number of Sequences: 37544
Number of extensions: 321420
Number of successful extensions: 672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)