Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0241
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_9561| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_45493| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)            28   5.7  

>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -3

Query: 483 EHCGTCYQSKKNLYFLILNFH-----FKCGICLLMFSFQC 379
           E CG C+ S   L   I + H     FKC  C L+FS+QC
Sbjct: 579 EKCGKCFSSTSYLKLHIKSVHNEKKLFKCDQCNLLFSWQC 618


>SB_9561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 623 IQTLNLYGKHICSSRSPVIYTSNPKSVIIEK-RTGHRAPTSYLP 495
           I  +++ G+++    S V +TSNP+S I EK R G R P  + P
Sbjct: 61  IVLVSVGGRYVFGGYSDVAWTSNPESGIHEKMRLGIRNPCYWNP 104


>SB_45493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 450 FFWTDSKYHNVRWS 491
           F+WTD+K H ++WS
Sbjct: 109 FWWTDNKGHEIKWS 122


>SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)
          Length = 817

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 450 FFWTDSKYHNVRWS 491
           F+WTD+K H ++WS
Sbjct: 102 FWWTDNKGHEIKWS 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,298,663
Number of Sequences: 59808
Number of extensions: 386233
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)