Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0241
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-4|CAA96678.1|  204|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF068713-18|AAC17791.2|   96|Caenorhabditis elegans Hypothetical...    28   5.0  
Z81127-4|CAB03389.1|  344|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z72514-4|CAA96678.1|  204|Caenorhabditis elegans Hypothetical
           protein T10B10.6 protein.
          Length = 204

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 314 LLQSFPLIL-SLPIVCRSFPIIQLYRQPIV 228
           L +S PLI  SLP++  S P+I+ Y  P+V
Sbjct: 118 LKESLPLIRESLPLIRESLPLIRQYLDPLV 147


>AF068713-18|AAC17791.2|   96|Caenorhabditis elegans Hypothetical
           protein T24A6.1 protein.
          Length = 96

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -3

Query: 492 PTTEHCGTCYQSKKNLYFLILNFHFKCGICLLMFSFQCFAYCLNVSKSYCYWIWT 328
           PT    G+C+  + NL   I +F           +F  F    N  K Y  +IWT
Sbjct: 47  PTPSWLGSCFAKRINLTKFIFSFFM-----FNKHNFSLFVLTFNNKKQYSRYIWT 96


>Z81127-4|CAB03389.1|  344|Caenorhabditis elegans Hypothetical
           protein T22G5.4 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -3

Query: 453 KNLYFLILNFHFKCGICLLMFSFQCFAYCLNVSKSYCYWIWTLEWRPPPVLSTDFVLANS 274
           K  Y LI+     C  C L+  F  F +       YC ++ T++     ++ST  V  N 
Sbjct: 114 KTKYILIMCIMPTC--CALIVFFVNFIFVTEEDAPYCAYMLTMDDGVFEIISTSVVACNI 171

Query: 273 LPVL 262
           L +L
Sbjct: 172 LTLL 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,841
Number of Sequences: 27780
Number of extensions: 306593
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)