Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0241
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.5  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 507 ILSTVPTTEHCGTCYQS 457
           I+S+V TT H  TCY S
Sbjct: 305 IISSVFTTRHNATCYLS 321


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 507 ILSTVPTTEHCGTCYQS 457
           I+S+V TT H  TCY S
Sbjct: 11  IISSVFTTRHNATCYLS 27


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 611 NLYGKHICSSRSPVIYTSNPKSVIIEKRTG 522
           +L GK   ++      T NP+ VI+ +RTG
Sbjct: 138 DLPGKSTTTTAEVKRDTINPEDVILIRRTG 167


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 193 PFPHCSIDCPPGVCISELKY 134
           P  H +I  P  VC ++LK+
Sbjct: 69  PCKHPTIIMPQDVCFNDLKF 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,905
Number of Sequences: 438
Number of extensions: 4327
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)