Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0241
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    29   2.7  
At2g45040.1 68415.m05607 matrix metalloproteinase nearly identic...    29   3.5  
At4g25520.1 68417.m03680 transcriptional co-regulator family pro...    28   4.7  
At3g11402.1 68416.m01388 DC1 domain-containing protein contains ...    28   4.7  
At4g01350.1 68417.m00175 DC1 domain-containing protein contains ...    27   8.1  
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    27   8.1  

>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 608 LYGKHICSSRSPVIYTSNPKSVIIEKRTGHRAPTSYLPYR 489
           LY   +C+  S +  T NP  ++IE    H+ P + LP R
Sbjct: 208 LYHCSVCNFTSCLGCTKNPPLLVIEHMKTHKHPLTLLPRR 247


>At2g45040.1 68415.m05607 matrix metalloproteinase nearly identical
           to metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 342

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 644 STITPL*IQTLNLYGKHICSSRSPVIYTSNPK-SVIIEKRTGHRAPTSYLP 495
           +TI    +  LNL+ + I  +R+P  +T+NP   V I +   H     YLP
Sbjct: 14  TTIFSFFLLYLNLHNQQIIEARNPSQFTTNPSPDVSIPEIKRHLQQYGYLP 64


>At4g25520.1 68417.m03680 transcriptional co-regulator family
           protein contains similarity to GP|18033922|gb|AAL57277
           SEUSS transcriptional co-regulator [Arabidopsis
           thaliana]
          Length = 748

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 288 QNQWKGLEEVSTRGSISNNSNSY*HLDNKQNIE 386
           Q Q + L++ + +GS+    NSY H+D K  +E
Sbjct: 72  QQQQQLLQQQTGQGSVPMRENSYSHVDKKPRLE 104


>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 708

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 498 TVPTTEHCGTCYQSKKNLYFLILNFHFKCGICLLMFSFQCFAYCLNVSKSY 346
           +V TT  C TC ++    +    N HF C  C + F F C  Y   ++  Y
Sbjct: 137 SVNTTNGCFTCGENTSP-WIDHHNVHFFCKRCHVEFHFGCHTYPSELTHPY 186


>At4g01350.1 68417.m00175 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 608 LYGKHICSSRSPVIYTSNPKSVIIEKRTGHRAPTSYLPYRPPNI 477
           LY   +C+  S +  T NP  ++IE    H+ P    P R P I
Sbjct: 208 LYHCSVCNFTSCLGCTKNPPLLVIEHIKTHKHPLILFPRRIPCI 251


>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 339 WIWTLEWRPPPVLSTDFVLANSLPV 265
           W++++EW+PP +   D  L N  P+
Sbjct: 306 WVYSVEWQPPVIDFIDGRLVNHQPL 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,576,176
Number of Sequences: 28952
Number of extensions: 277472
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)