Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0240
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 35 0.014
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces... 30 0.30
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 27 2.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 27 3.7
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 6.5
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 6.5
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 8.6
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 8.6
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 8.6
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 34.7 bits (76), Expect = 0.014
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Frame = +2
Query: 143 RSKIYNLKMAQTNIDDTVTRYENFINEVLKEDLRELERN*SFFNNEVSDLIQQKHTLKVL 322
+++I +++ +++ + E ++E LK +++LER S ++VS L QQK L VL
Sbjct: 1005 KTEIQEMRLTNQKMNEKSIQQEGSLSESLKR-VKKLERENSTLISDVSILKQQKEELSVL 1063
Query: 323 TN-KNIHPTGFKTQVNVGCNFFMEASVSKTDTLLVNI-GLNHYIEFKLSEA--NRFLEAR 490
+ + + +VN ++EA V + L + LN + +A N+ LEA+
Sbjct: 1064 KGVQELTINNLEEKVN-----YLEADVKQLPKLKKELESLNDKDQLYQLQATKNKELEAK 1118
Query: 491 IKSYEKNL 514
+K N+
Sbjct: 1119 VKECLNNI 1126
>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/89 (21%), Positives = 40/89 (44%)
Frame = +2
Query: 179 NIDDTVTRYENFINEVLKEDLRELERN*SFFNNEVSDLIQQKHTLKVLTNKNIHPTGFKT 358
N D+ + +YE NE++++ E+ S F E ++H ++ N T K
Sbjct: 11 NDDEYLKQYEEVGNELIEQQSDEIASQLSTF-QEALKTFAREHATEIKQNSQFRNTFVKL 69
Query: 359 QVNVGCNFFMEASVSKTDTLLVNIGLNHY 445
+ +G + F+ S ++ +G+N +
Sbjct: 70 ALKIGLDPFVSGS---DESAWAAVGMNEF 95
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 536 HRFLHTLS*CYTVFPNYKTET 598
H+FL LS C+TV P Y T
Sbjct: 581 HQFLLVLSICHTVIPEYDEST 601
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 305 HTLKVLTNKNIHPTGFKTQVNVGCNFFMEASVSKTDTL 418
H+L++L++ HP+G ++ G + + V + D L
Sbjct: 249 HSLEILSSSAYHPSGSSNGISAGLTQSVASPVGQVDNL 286
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 206 ENFINEVLKEDLRELERN*SFFNNEVSDLIQQKHTLKVLTN 328
EN I + E+ EL+ + + NN + DL ++KH + + N
Sbjct: 324 ENTIRRLALEN-HELKNSNNQLNNHIDDLTREKHLIALSNN 363
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 266 FFNNEVSDLIQQKHTLKVLTNKNIHPTGFKTQ 361
F +N+ + L K TLK + N+ HP G TQ
Sbjct: 236 FLHNKNTGL--DKETLKAIENEFYHPQGVSTQ 265
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 466 SQQIFGGENKVL*KKSHEVRLRAAQVSAH-IKLMLYGISELQNRNNSDGSS 615
S+QIF + L SH +RLR+ +SA + Y S +Q+ N+ S
Sbjct: 259 SKQIFQQMRRSLGANSHFIRLRSNYISAKPLDTDRYDTSSIQSLKNAPRDS 309
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/74 (20%), Positives = 36/74 (48%)
Frame = +2
Query: 29 LTKKLFEFD**LNVFSQYLHRYRKIK*INIELEYSHISRSKIYNLKMAQTNIDDTVTRYE 208
L K + E++ ++ S+ L K + + L +++ +K+Y+ + + D++ +
Sbjct: 727 LEKDMGEYEVAVSTLSEILAVRSKELCVQVSLAETYVRLAKLYHARGFYSRAADSLEKSI 786
Query: 209 NFINEVLKEDLREL 250
VLKED+ +
Sbjct: 787 QICCNVLKEDITSI 800
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 8.6
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +2
Query: 275 NEVSDLIQQKHTLK-VLTNKNIHPTGFKTQVNVGCNFFMEASVSKTDTLLVNIGLNHYIE 451
NE+ DLIQ+ TLK L ++ NFF E V L IE
Sbjct: 48 NEIQDLIQENFTLKSYLVKLEARFRNQSQTEDLLKNFFPEIQTIHKKISQVQ-SLLKIIE 106
Query: 452 FKLSEANRFLEARIKS 499
K S + FLEA +KS
Sbjct: 107 KKCS--SDFLEANVKS 120
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 386 MEASVSKTDTLLVNIGLNHYIEFKLSEANRFLEARI 493
+EA S+ DTL + LN+ F + +A FLE+ +
Sbjct: 167 LEAMDSQNDTLFTSKQLNNGPNFPVEKATFFLESNM 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,376
Number of Sequences: 5004
Number of extensions: 54373
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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