Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0240
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1131 + 24190675-24190814,24190938-24191021,24191628-241917... 37 0.015
12_02_0782 + 23114532-23114596,23116259-23116316,23116445-231165... 28 6.8
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 28 9.0
11_06_0732 - 26740718-26741704,26741876-26742478 28 9.0
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 28 9.0
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 28 9.0
07_03_0457 - 18404577-18405193,18405317-18405563,18405734-184059... 28 9.0
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 28 9.0
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 28 9.0
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 28 9.0
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 28 9.0
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 28 9.0
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 28 9.0
04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637 28 9.0
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 28 9.0
>07_03_1131 +
24190675-24190814,24190938-24191021,24191628-24191735,
24193212-24193266,24193360-24193404
Length = 143
Score = 37.1 bits (82), Expect = 0.015
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = +2
Query: 188 DTVTRYENFINEVLKEDL-RELERN*SFFNNEVSDLIQQKHTLKVLTNKNIHPTGFKTQV 364
+ V ++E+F++ LK DL + + F + + + K ++ L + T ++ V
Sbjct: 13 EKVKKFEDFVDRRLKPDLVNTIAQRDKVFQQQKT-FLDLKRNIENLEKNGV--TSMRSMV 69
Query: 365 NVGCNFFMEASVSKTDTLLVNIGLNHYIEFKLSEANRFLEARIKSYEKNLMRY 523
N+G + V T + V+IGL ++EF EA +F+ R + + Y
Sbjct: 70 NLG------SEVPDTRHIFVDIGLGFHVEFTWQEALQFISVRESRLARQIDEY 116
>12_02_0782 +
23114532-23114596,23116259-23116316,23116445-23116516,
23117468-23117587,23117668-23117769,23118254-23118274
Length = 145
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +2
Query: 383 FMEASVSKTDTLLVNIGLNHYIEFKLSEANRFLEARIKSYEKNL 514
+ A + TD++ + +G N +E+ EAN L+ +++ + +L
Sbjct: 78 YSRAKIEDTDSVCLWLGANVMLEYSCDEANALLKKNLENAKASL 121
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 233 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 267
>11_06_0732 - 26740718-26741704,26741876-26742478
Length = 529
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 233 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 267
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 233 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 267
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 233 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 267
>07_03_0457 -
18404577-18405193,18405317-18405563,18405734-18405953,
18406239-18406333
Length = 392
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 137 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 171
>07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -2
Query: 684 FYET*YTEHNNSLLQIIHTVALSTRTITIV 595
F ET + +HN+ +LQ+I ++ +T+TI +
Sbjct: 1289 FLETHFGQHNDIILQMIKSLQKATKTIQTI 1318
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 228 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 262
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 233 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 267
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 233 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 267
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 185 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 219
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 224 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 258
>04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637
Length = 504
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 233 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 267
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 740 GIYTV*GFTNLKYIYLDKNSMKHSTPNIITVYSKL 636
G +T G+ NLK Y + +++HST I ++ L
Sbjct: 212 GAWTTRGYQNLKAKYFQRANLRHSTKQIKNRFTHL 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,911,655
Number of Sequences: 37544
Number of extensions: 280626
Number of successful extensions: 576
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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