Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0240
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58587| Best HMM Match : Prefoldin (HMM E-Value=1.2e-16)             65   7e-11
SB_11752| Best HMM Match : Remorin_C (HMM E-Value=4.6)                 30   1.7  

>SB_58587| Best HMM Match : Prefoldin (HMM E-Value=1.2e-16)
          Length = 159

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 26/105 (24%), Positives = 62/105 (59%)
 Frame = +2

Query: 179 NIDDTVTRYENFINEVLKEDLRELERN*SFFNNEVSDLIQQKHTLKVLTNKNIHPTGFKT 358
           ++ + + +YE F+++ L +DL  + ++      ++++  Q K +++ +   ++     ++
Sbjct: 10  DVQEKIRKYEEFLDQRLAKDLEAVFKSQDEIVAKITEYTQLKSSIEQIQKTDLKGKDLRS 69

Query: 359 QVNVGCNFFMEASVSKTDTLLVNIGLNHYIEFKLSEANRFLEARI 493
           +V++GCNFF +ASV     + + +G   ++EF LSEA  F+E ++
Sbjct: 70  RVDLGCNFFCQASVPDPSRIFIAVGYGFFVEFTLSEALNFIEKKL 114



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 532 AAQVSAHIKLMLYGISELQNRN 597
           AA++ AH+KL+L G+ ELQ  N
Sbjct: 128 AAKIKAHMKLVLGGLQELQGLN 149


>SB_11752| Best HMM Match : Remorin_C (HMM E-Value=4.6)
          Length = 192

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +2

Query: 80  YLHRYRKIK*INIELEYSHISRSKIYNLKMAQTNIDDTVTRYENFINEVLKEDLRELER 256
           +LH YR++K I+IE     I +S +  +    +N+DD    Y++ + ++L       E+
Sbjct: 23  FLHMYRRLKQIDIEAFVKDIQQSPL--VVDPPSNVDDLAACYDDSLAKILDAQCTSKEK 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,733,944
Number of Sequences: 59808
Number of extensions: 373142
Number of successful extensions: 986
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)