Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0240
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26660.1 68414.m03246 c-myc binding protein, putative / prefo...    48   7e-06
At5g23290.1 68418.m02725 c-myc binding protein, putative / prefo...    34   0.087
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont...    31   0.61 
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    30   1.9  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    27   9.9  

>At1g26660.1 68414.m03246 c-myc binding protein, putative /
           prefoldin, putative similar to Swiss-Prot:Q99471
           prefoldin subunit 5 (C-myc binding protein Mm-1) (Myc
           modulator 1) [Homo sapiens]
          Length = 152

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 29/106 (27%), Positives = 50/106 (47%)
 Frame = +2

Query: 206 ENFINEVLKEDLRELERN*SFFNNEVSDLIQQKHTLKVLTNKNIHPTGFKTQVNVGCNFF 385
           E  I++ LK+ L     +      E   L   +  L+ L    ++    KT+VN+G   +
Sbjct: 13  EEIIDKGLKQKLVHATASRDKIFEEQKTLSDLRKNLETLEKNGVN--SLKTRVNLGSEVY 70

Query: 386 MEASVSKTDTLLVNIGLNHYIEFKLSEANRFLEARIKSYEKNLMRY 523
           M+A V  T  + +++GL  Y+EF   EA  ++  R +  +K L  Y
Sbjct: 71  MQAEVPDTRHIFMDVGLGFYVEFTRQEALDYIAQREERTQKQLEEY 116


>At5g23290.1 68418.m02725 c-myc binding protein, putative /
           prefoldin, putative similar to Swiss-Prot:Q99471
           prefoldin subunit 5 (C-myc binding protein Mm-1) (Myc
           modulator 1) [Homo sapiens]
          Length = 151

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 16/80 (20%), Positives = 39/80 (48%)
 Frame = +2

Query: 272 NNEVSDLIQQKHTLKVLTNKNIHPTGFKTQVNVGCNFFMEASVSKTDTLLVNIGLNHYIE 451
           NN  +  ++       L + ++ P G K  V +  + ++  ++ + D +LV+IG  ++IE
Sbjct: 37  NNIRTATVRLDAAAAALNDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDIGTGYFIE 96

Query: 452 FKLSEANRFLEARIKSYEKN 511
             + +   + + +I   + N
Sbjct: 97  KTMDDGKDYCQRKINLLKSN 116


>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
           contains weak similarity to cytoplasmic linker protein
           CLIP-170 (GI:2905649) [Gallus gallus]
          Length = 588

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
 Frame = +2

Query: 86  HRYRKIK*INIEL----EYSHISRSKIYN--LKMAQTNIDDTVTRYENFINEVLKEDLRE 247
           H  R++K + IE+    E  H+ ++++YN  +++ + N+ DT+   ENF N++   ++ E
Sbjct: 196 HEIRQLK-LQIEMVASSEAGHVKQAELYNSEVQLLRGNLMDTLFHVENFRNQLKDCEISE 254

Query: 248 LE 253
            E
Sbjct: 255 AE 256


>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
           to CAF protein [Arabidopsis thaliana] GI:6102610;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF03368:
           Domain of unknown function, PF00636: RNase3 domain,
           PF00035: Double-stranded RNA binding motif
          Length = 1676

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
 Frame = +2

Query: 149 KIYNLKMAQTNIDDTVTRYENFINEVLKEDLRELERN*SFFNNE----VSDLIQQKHTLK 316
           K+Y  + A ++   +  RYEN + ++ +  L  L+        +    +  L+++ H   
Sbjct: 347 KVYYYRSALSDASQSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNL 406

Query: 317 VLTNKNIHPTGFKTQVNVGCNFFMEAS 397
           + T  N+   G   + NV C  F+EA+
Sbjct: 407 IYTLLNLGLWGAIQRANVYCLRFLEAA 433


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 125 EYSHISRSKIYNLKMAQTNIDDTVTRYENFINEVLKEDLRELERN*SFFNNEVSDLIQQ 301
           EY  +  +     +  Q ++ +  +  E FI E LK DLR  ER  +    ++SDL +Q
Sbjct: 461 EYERVVEAYCLVNQKLQDSVSEQ-SNMEKFIME-LKADLRRRERENTLLQKDISDLQKQ 517


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,784,882
Number of Sequences: 28952
Number of extensions: 255866
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)