Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0236
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 81 2e-16
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 37 0.003
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 37 0.004
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 28 1.4
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 4.1
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 4.1
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 7.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 9.5
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.5
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.5
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 80.6 bits (190), Expect = 2e-16
Identities = 55/162 (33%), Positives = 74/162 (45%), Gaps = 4/162 (2%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGPSISASSARRLYFSVV*KCPLR----STNLP 343
NPLF RP++F IGQ IQP RDLSRF P RR ++ K P L
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 344 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAKHSHQ 523
++ + +++ T +S ++ H
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS--KKPYNVKYGLNHVVA 141
Query: 524 AGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
++ LV+IA DVDPIELV+FLPALC+KMGVPY IVK +
Sbjct: 142 LIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNK 183
Score = 75.8 bits (178), Expect = 7e-15
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 408
+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 51 KWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
+V+A D +PIE++L LP LC VPY V
Sbjct: 51 IVMAADTEPIEILLHLPLLCEDKNVPYVFV 80
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 521 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPY 631
+A R+ E LV++A D+ P++++ +P LC VPY
Sbjct: 63 KAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPY 99
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = -1
Query: 328 SEGALSDDAEVQPSG------AGCGYTWAIFKSGQVTSWLNALTNSKVLWPLLEERIHDL 167
S+ L D PSG AG G+ AIF +GQ+ + N ++ KV+ PL+ I
Sbjct: 147 SDKVLQDGFRSFPSGHTSFSFAGLGFL-AIFLAGQLKMFRNKTSSWKVVVPLVPLSIASW 205
Query: 166 LGLN 155
+GL+
Sbjct: 206 IGLS 209
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 740 EGRGSHQDELXRSAYRRS 793
+GR SH DE R AY RS
Sbjct: 279 DGRPSHDDEYRRDAYSRS 296
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 749 HDLRRRKPRSPDSTFVRAKHVHVLRCTSATEA 654
H R+PR P F+ A V LR A EA
Sbjct: 50 HKHAMRRPRGPGGRFLTADKVSKLRAQEAAEA 81
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 289 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 390
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 273 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 362
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +1
Query: 676 RKTCTCLALTNVESGDRGFLLRRSWKPSRRTSTERLPK 789
RKT +A T S D LL S KPS TST+ K
Sbjct: 1351 RKTNKPVATTIFSSDDEDDLLPSSLKPSTITSTKASAK 1388
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 471 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 301
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,636
Number of Sequences: 5004
Number of extensions: 54909
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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