Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0236
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 84 1e-16
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 79 5e-15
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 68 8e-12
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 33 0.20
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 33 0.27
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 33 0.27
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 33 0.27
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 1.1
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 28 7.6
11_04_0387 - 17037150-17037661,17038194-17038324,17038395-17038453 28 10.0
05_05_0087 - 22291732-22292029,22292967-22293034,22293640-222937... 28 10.0
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 10.0
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 83.8 bits (198), Expect = 1e-16
Identities = 55/159 (34%), Positives = 69/159 (43%), Gaps = 1/159 (0%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 355
NPLFEKRPK F IG + P +DL RF P + +R K P R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 356 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAKHSHQAGR 532
+ L F + + ++ H
Sbjct: 82 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIE 140
Query: 533 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKG+
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 179
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 405
+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 49 KWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 405
+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 33 KWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 66.1 bits (154), Expect = 3e-11
Identities = 47/151 (31%), Positives = 61/151 (40%), Gaps = 1/151 (0%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 355
NPLFEKRPK F IG + P +DL RF P + +R K P R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 356 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAKHSHQAGR 532
+ L F + + ++ H
Sbjct: 66 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIE 124
Query: 533 EEEGALVVIAHDVDPIELVLFLPALCRKMGV 625
+ + LVVIAHDVDPIELV++LPALCRKM +
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 68.1 bits (159), Expect = 8e-12
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +2
Query: 533 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
+ + LVVIAHDVDPIELV++LPALCRKM +PYCIVKG+
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK 164
Score = 61.7 bits (143), Expect = 7e-10
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 405
RWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 50 RWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
NPLFEKRPK F IG + P +DL RF P
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 33.5 bits (73), Expect = 0.20
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 530 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
R + L +IA ++ PI+++ +P LC + +PY V
Sbjct: 57 RRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYV 93
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
VV+A D +P+E++L LP L VPY V
Sbjct: 52 VVMAADAEPLEILLHLPLLAEDKNVPYVFV 81
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
VV+A D +P+E++L LP L VPY V
Sbjct: 54 VVMAADTEPLEILLHLPLLAEDKNVPYVFV 83
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 530 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
R L VIA ++ PI+++ +P LC + +PY V
Sbjct: 57 RRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYV 93
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 273 PHPAPEGCTSASSESAPSDQP 335
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 286 GAGCGYTWAIFKSGQVTSWLNA 221
G GCG+ AI +SG++ +W +A
Sbjct: 83 GGGCGFAMAISESGKLLTWGSA 104
>11_04_0387 - 17037150-17037661,17038194-17038324,17038395-17038453
Length = 233
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -3
Query: 785 GKRSVEVRLDGFHDLRRRKPR 723
GK+S RLDG H+ RRRKP+
Sbjct: 30 GKKSCRKRLDG-HNRRRRKPQ 49
>05_05_0087 -
22291732-22292029,22292967-22293034,22293640-22293723,
22295967-22296010,22296210-22296300,22296452-22296634,
22297594-22297637,22298122-22298355,22298452-22298712,
22298790-22298915,22298993-22299077,22299171-22299244,
22299988-22300186
Length = 596
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 319 ALSDDAEVQPSGAGCGYTWAIFKSGQVTSW 230
A + DA +G GCG+ A+ + G++ +W
Sbjct: 45 AAAGDAWRDVAGGGCGFAMAVSEQGKLFTW 74
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 221 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 129
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,846,717
Number of Sequences: 37544
Number of extensions: 429434
Number of successful extensions: 1326
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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