Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0236
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   1e-15
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        67   1e-11
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          42   8e-04
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        38   0.013
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   7.7  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 33/51 (64%), Positives = 43/51 (84%)
 Frame = +1

Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 408
           RWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET
Sbjct: 56  RWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPET 106



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +2

Query: 536 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
           ++  LVVIAHDVDPIE+V++LPALCRKM VPYCIVKG+
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGK 187



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/30 (70%), Positives = 22/30 (73%)
 Frame = +2

Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
           NPL EKRP+NF IG  IQP RDLSRF   P
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWP 58


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +2

Query: 536 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
           ++  LVVIAHDVDPIE+V++LPALCRKM VPYCIVKG+
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGK 96


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +2

Query: 467 MSLHQRGPTPSDPAKHSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG 646
           ++L  +  T     K   +A R+ E   V++A DV PI+++  +P +C    +PY  V  
Sbjct: 90  LNLASKAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPS 149

Query: 647 QVP 655
           +VP
Sbjct: 150 KVP 152


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
           +V+A D +P+E++L LP LC    VPY  V+ +
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSK 145


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 252 LKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTG 353
           LK A+          T+ASSE+APS  P  PD G
Sbjct: 28  LKRAKEIAARMGSASTAASSEAAPSSAPSMPDYG 61


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 486 PLWWRLIFLGNLSFSSFPQPLFPG 415
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,826,341
Number of Sequences: 59808
Number of extensions: 447196
Number of successful extensions: 1957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1957
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)