Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0236
(805 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 84 1e-16
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 80 2e-15
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 79 3e-15
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 59 4e-09
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 38 0.006
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.034
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 31 0.97
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 31 1.3
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 31 1.3
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 28 9.0
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 9.0
AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical ... 28 9.0
AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical ... 28 9.0
AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix metall... 28 9.0
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 84.2 bits (199), Expect = 1e-16
Identities = 39/84 (46%), Positives = 49/84 (58%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXX 435
+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 57 KWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLR 116
Query: 436 XXXXXXXXXXXXXXXXRPNTIRSG 507
RPNT+R G
Sbjct: 117 ARAEARAAGKKEEVTKRPNTVRHG 140
Score = 57.6 bits (133), Expect = 1e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +2
Query: 548 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
LV+IAHDV+P+E+VL LPALCRK VPY I+KG+
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGK 188
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
NPLFEKR +NF IGQ IQP +D++RF P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/51 (64%), Positives = 42/51 (82%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 408
+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 57 KWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 57.6 bits (133), Expect = 1e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +2
Query: 548 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
LV+IAHDV+P+E+VL LPALCRK VPY I+KG+
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGK 168
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
NPLFEKR +NF IGQ IQP +D++RF P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 79.4 bits (187), Expect = 3e-15
Identities = 33/51 (64%), Positives = 42/51 (82%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 408
+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 160 KWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
NPLFEKR +NF IGQ IQP +D++RF P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 58.8 bits (136), Expect = 4e-09
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 354
+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 160 KWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
NPLFEKR +NF IGQ IQP +D++RF P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 548 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
++V+A D +P+E++L LP LC VPY V+ +
Sbjct: 53 IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSK 86
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.034
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -2
Query: 450 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 331
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 31.1 bits (67), Expect = 0.97
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 530 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
R E + ++A +V PI++ +P +C + +PY +
Sbjct: 81 RRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYI 117
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +2
Query: 488 PTPSDPAKHSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQV 652
P+PS+P S + E +++ AHD DP++ + P + + +P+ VK ++
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAVKERI 504
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +2
Query: 488 PTPSDPAKHSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQV 652
P+PS+P S + E +++ AHD DP++ + P + + +P+ VK ++
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAVKERI 504
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +3
Query: 246 PDLKMAQVYPHPAPE--GCTSASSESAPSDQPIYP 344
P Q YP P P+ GCT + + P QP P
Sbjct: 155 PPQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +3
Query: 246 PDLKMAQVYPHPAPE--GCTSASSESAPSDQPIYP 344
P Q YP P P+ GCT + + P QP P
Sbjct: 155 PPQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +3
Query: 246 PDLKMAQVYPHPAPE--GCTSASSESAPSDQPIYP 344
P Q YP P P+ GCT + + P QP P
Sbjct: 155 PPQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 323 LRSTNLPRHWTRLQLRA 373
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical
protein H19M22.3c protein.
Length = 453
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 583 LNRINIMSDDHKCAFFFSTSLVTVFCRIGWCWASLVEAH 467
+N I + DD KC ++ + FC W + +VEAH
Sbjct: 271 INEIQLDIDD-KCGVIWNYGGASDFCLYVWLMSQIVEAH 308
>AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical
protein H19M22.3a protein.
Length = 519
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 583 LNRINIMSDDHKCAFFFSTSLVTVFCRIGWCWASLVEAH 467
+N I + DD KC ++ + FC W + +VEAH
Sbjct: 303 INEIQLDIDD-KCGVIWNYGGASDFCLYVWLMSQIVEAH 340
>AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 394
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 583 LNRINIMSDDHKCAFFFSTSLVTVFCRIGWCWASLVEAH 467
+N I + DD KC ++ + FC W + +VEAH
Sbjct: 212 INEIQLDIDD-KCGVIWNYGGASDFCLYVWLMSQIVEAH 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,693,312
Number of Sequences: 27780
Number of extensions: 324793
Number of successful extensions: 921
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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