Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0236
(805 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 80 1e-15
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 80 2e-15
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.008
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 0.22
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 0.22
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 0.22
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 0.29
At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 31 0.90
At5g50670.1 68418.m06279 squamosa promoter-binding protein, puta... 29 3.6
At5g50570.2 68418.m06264 squamosa promoter-binding protein, puta... 29 3.6
At5g50570.1 68418.m06263 squamosa promoter-binding protein, puta... 29 3.6
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.8
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 405
+WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 47 KWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96
Score = 68.5 bits (160), Expect = 5e-12
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +2
Query: 533 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKG+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 177
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP-SISASSARRL 295
NPLFE+RPK F IG + P +DLSR+ P SI +R+
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 405
+WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 48 KWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97
Score = 68.5 bits (160), Expect = 5e-12
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +2
Query: 533 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 649
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKG+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 178
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP-SISASSARRL 295
NPLFE+RPK F IG + P +DLSR+ P SI +R+
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 664 ALVHRKTCTCLALTNVESGDR 726
A+VH+KT +CL LT V++ D+
Sbjct: 183 AVVHQKTASCLCLTTVKNEDK 203
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 530 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
R + L VIA ++ PI+++ LP LC + GVPY V
Sbjct: 63 RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYV 99
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
VV+A D +P+E++L LP L VPY V
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFV 115
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
VV+A D +P+E++L LP L VPY V
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFV 83
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
VV+A D +P+E++L LP L VPY V
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFV 83
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 640
+V+A D +P+E++L LP L VPY V
Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFV 83
>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
low similarity to SP|Q01593 Abscisic acid-insensitive
protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
protein homolog {Oryza sativa}; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 721
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 616 NGCTILHCQGASPASVALVHRKTCTCLALTNVESGDRGFLLRRSWKPSRRTSTER 780
+GCT + C SP+ + H + C+C + R LLRR K + R
Sbjct: 565 DGCTCIICI-QSPSGIGPKHDRCCSCAVCDTNKRRRRSLLLRREKKQMEKEDNAR 618
>At5g50670.1 68418.m06279 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 785 GKRSVEVRLDGFHDLRRRKPR 723
GKRS RLDG H+ RRRKP+
Sbjct: 157 GKRSCRKRLDG-HNRRRRKPQ 176
>At5g50570.2 68418.m06264 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931677;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 785 GKRSVEVRLDGFHDLRRRKPR 723
GKRS RLDG H+ RRRKP+
Sbjct: 157 GKRSCRKRLDG-HNRRRRKPQ 176
>At5g50570.1 68418.m06263 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931677;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 785 GKRSVEVRLDGFHDLRRRKPR 723
GKRS RLDG H+ RRRKP+
Sbjct: 157 GKRSCRKRLDG-HNRRRRKPQ 176
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 501 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 343
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,042,841
Number of Sequences: 28952
Number of extensions: 313757
Number of successful extensions: 931
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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