Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0235
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 83 4e-17
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 1e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 42 1e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 40 4e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 40 5e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 37 0.003
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.005
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.007
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.007
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.012
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 35 0.012
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.027
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 34 0.027
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 34 0.027
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.036
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.083
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 31 0.14
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.25
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.44
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 29 0.77
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.77
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 27 4.1
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.5
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 7.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 7.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 7.2
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 9.5
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 83.0 bits (196), Expect = 4e-17
Identities = 33/55 (60%), Positives = 47/55 (85%)
Frame = +3
Query: 342 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
P +SVEG+I+ V+ VH EA EE +++ F++FG +KN+HLNLDRRTG++KGYAL+E
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIE 57
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.5 bits (93), Expect = 1e-04
Identities = 14/46 (30%), Positives = 31/46 (67%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
LF+ N+ E+D+++ F FG+++ +H+ +D++T KG+A ++
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYID 370
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
L V+N+ ++ +EE++++ F FG I+ ++L D+ TG KG+A V
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFV 248
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +3
Query: 327 SGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+G G Q S +FV N+ A E+D+ F G+I++I L D ++G LKG+ V
Sbjct: 354 AGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYV 412
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 333 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
T Q S E +FV + ++ + +F E+G I + +D ++G KGY V+
Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVD 310
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+++ N+ + E+DI FSEFGE +I+L D+ TG KG+A ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLK 78
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
ILFV N+ E + D++ F + G+I+ + L TG KG+ V+
Sbjct: 229 ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVD 275
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+LFV ++ Q+ED++ FS FG+I + + D+ TG YA +E
Sbjct: 245 VLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIE 291
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+F+S + + +E DI+ +F+ +G I+ I + ++ TG GYA V
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFV 146
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV V + EE+ +N F++FG + + L +D+ TG +G+ V
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFV 293
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*R 512
L VSN+H +ED++ F FG+I+ +HL D + KG+ ++ R
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYR 388
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+L+V + E+ ++ FS+FG + + ++ +R+TG K YA +E
Sbjct: 106 VLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIE 152
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV N+ + +++D+ N FS+ G IK+ + + TG +GY V
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFV 51
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*R 512
+FV N+ E E+++ N F +FG + L D T G ++ R
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.9 bits (74), Expect = 0.027
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+FV N+ EA+EE + F + G I + + D +T KG+A ++
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.9 bits (74), Expect = 0.027
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 318 EGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
E D P V LF+ + +E +++ F FG ++++ LN + R GFLK
Sbjct: 391 ERDPTIPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLK 447
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.5 bits (73), Expect = 0.036
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 357 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+G LF+ N+ +E +E ++ +FS FG I + + D + G KG+ V
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFV 409
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.083
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFVS + QE+++Q FS+FG + ++ + + T +G+ +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFL 147
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 31.5 bits (68), Expect = 0.14
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
++V N+ EE I FS+ GEI+ I + +DR T G+ VE
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVE 79
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.25
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FVSN+ E ++ F FGE+ ++ L L+ TG G +
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.9 bits (64), Expect = 0.44
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 333 TPGPQRSVEGWILFVSNVHEE--AQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
TP +++ LFV N+ + + ++ FS+FG IK+ L T KGY V
Sbjct: 409 TPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFV 467
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 231 AKRSWFWQEAGGG--SAAERGNRGRYDSLAPEGDSGTPGPQR 350
AKR W GG + A RGNRG ++ +G GP R
Sbjct: 98 AKRFWDQYYPGGDYDALARRGNRGPANTRVMNSSAGATGPSR 139
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
+FV + E+D+Q F FG I NI + + GF++
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQ 338
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 306 SLAPEG--DSGTPGPQ-RSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 476
S+ P G + P PQ +FV + + EE+++ F FGEI + + +
Sbjct: 281 SMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGC 340
Query: 477 GFLK 488
GF++
Sbjct: 341 GFVQ 344
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV N+ + +E + FSE+ + + DR G +G+ V
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFV 75
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 267 GSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFG 437
G + NR L+ + D +P PQ+ G+ VSN+ +E ++ + + S FG
Sbjct: 4 GGSGSITNRSTLKPLSVD-DLRSPSPQKEYRGFRTSVSNIPQE--KKFVPSHLSHFG 57
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 363 WILFVSNVHEEAQEEDIQNQFSEFGEI 443
++LF+SN+ E E DI+ F + I
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFI 99
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 384 VHEEAQEEDIQNQFSEFGE 440
+ EE +E+DI+N+ S F E
Sbjct: 72 IEEEEEEDDIENEASSFSE 90
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 252 QEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQ 347
QE GGGSA GN G +SG PQ
Sbjct: 372 QELGGGSAISNGN-GEPQKSIEFSESGAASPQ 402
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 342 PQRSVEGWILFVSNVHEEAQ--EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RL 515
P ++ L+V N+ + + +++ FS FG I + L +G KGY V R
Sbjct: 375 PNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQ 434
Query: 516 I 518
I
Sbjct: 435 I 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,253
Number of Sequences: 5004
Number of extensions: 54355
Number of successful extensions: 189
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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