Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0235
(803 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 4e-22
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 43 3e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 42 6e-04
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.003
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 38 0.010
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 36 0.029
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 36 0.038
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.051
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 34 0.12
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 34 0.16
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.36
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 33 0.36
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.36
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 31 1.1
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 31 1.1
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 31 1.4
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 29 3.3
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 29 4.4
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 29 5.8
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 7.7
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 28 7.7
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 102 bits (244), Expect = 4e-22
Identities = 48/73 (65%), Positives = 58/73 (79%), Gaps = 4/73 (5%)
Frame = +3
Query: 300 YDSLAPEGDSGTPGPQRS----VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLD 467
YDS+ G+ G GP R VEGWILFV+N+HEEAQE+DI FS++GEIKN+H+NLD
Sbjct: 269 YDSIEG-GEGGESGPARCEWHPVEGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLD 327
Query: 468 RRTGFLKGYALVE 506
RRTGF+KGYALVE
Sbjct: 328 RRTGFIKGYALVE 340
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/38 (60%), Positives = 32/38 (84%)
Frame = +2
Query: 509 ETYKQAASAREALDGADILGQAISVDWCFVKGPTKSHK 622
ET+K+A SA EAL+GA++LGQ ISVDW F++GP+K +
Sbjct: 342 ETFKEAQSALEALNGAEMLGQNISVDWAFIRGPSKKSR 379
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*R---LINKPLVHV 539
LFV N+ E+ +E D+ F +G++ +H+ DR TG KG +V+ R +NK L
Sbjct: 321 LFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEP 380
Query: 540 KH 545
H
Sbjct: 381 VH 382
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+FV N+ EA EE ++ FSE G + + L DR TG KGY E
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCE 72
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+++++VH + E+DI++ F FG++ + L+ + TG KGY +E
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIE 246
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 37.9 bits (84), Expect = 0.010
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
LFV + E +E ++ FS++GE+ + + +D TG +G+A V+
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQ 76
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 37.9 bits (84), Expect = 0.010
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 357 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 485
+GW +FV + +EA + FS +G I NI L LD+ GF+
Sbjct: 270 QGWCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFV 312
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
L ++ V +EDI+ F G + + L DR TG GYA V
Sbjct: 29 LIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFV 73
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 36.3 bits (80), Expect = 0.029
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 375 VSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
V+N+ EE +E D+Q F G I I L D+ T KG+A +
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFI 227
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 35.9 bits (79), Expect = 0.038
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+F+ N+ + +EE ++ F+ G ++++ L DR+TG KG+ V
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYV 102
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 35.5 bits (78), Expect = 0.051
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+F+ + E+ ++ S FGE++ +L D TG KGYA E
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCE 720
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 35.1 bits (77), Expect = 0.067
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 321 GDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYA 497
G+ G P G +F+ + + E+++ + GEI+ L +D TG KG+A
Sbjct: 139 GERGFPTTWTEESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFA 197
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +3
Query: 339 GPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
G + + ++++ ++ E +I+ F +FG + I L+ +++ KGYA VE
Sbjct: 90 GDEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVE 145
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+LFV ++ +ED++ FS FG I + + D++TG YA +E
Sbjct: 121 VLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIE 167
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 264 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWI-LFVSNVHEEAQEEDIQNQFSEFGE 440
G S +RG Y+ G S +R G LFV N+ + EE+++ F ++GE
Sbjct: 21 GDSRGDRGGGRNYNRNNGAGYSSMK--ERKFTGRCRLFVGNLID-CDEEEMKEMFKKYGE 77
Query: 441 IKNIHLNLDRRTGFLK 488
+ + +N ++ GF++
Sbjct: 78 VAEVFINKEKGFGFIR 93
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
++V + E+ E I F + G + N+H+ DR T +GY VE
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVE 60
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV + E+ ++ ++ F++FGEI+ + DR T KGY V
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFV 56
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 32.7 bits (71), Expect = 0.36
Identities = 27/127 (21%), Positives = 51/127 (40%)
Frame = +3
Query: 267 GSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIK 446
G ++ R + R DSL G+ + L++ + ++D+ ++G I
Sbjct: 75 GLSSGRSSSDRMDSLPDTGEE-------KLSKTNLYIRGLKANTTDDDLVRLCHKYGTII 127
Query: 447 NIHLNLDRRTGFLKGYALVE*RLINKPLVHVKHWMAQIYSAKRYQLIGASSRDPLNHIRR 626
+ LD+ T KGY V+ P+ K A + + Q+ +DP N +
Sbjct: 128 STKAILDKDTNLCKGYGFVD---FESPISAQKAVAALVNKGIQAQMAKQQEQDPTNLYIQ 184
Query: 627 DDKNNCN 647
+ NC+
Sbjct: 185 NLPQNCD 191
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 31.9 bits (69), Expect = 0.63
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 390 EEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
++ +ED++++F FG+I+ + + D +T KGY V+
Sbjct: 62 KDFNDEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVK 100
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
L V N+ ED++ F ++G++ +I++ DR T +G+A V
Sbjct: 18 LKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFV 62
>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
Length = 182
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 267 GSAAERGNRGRYDSLAPEGDSGTPG 341
GS E+GNRGR P G G PG
Sbjct: 32 GSKGEKGNRGRRGRRGPRGPPGKPG 56
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 267 GSAAERGNRGRYDSLAPEGDSGTPGP 344
G+ +RG RG S P+G++G PGP
Sbjct: 123 GAPGDRGERGSAGSDGPKGEAGGPGP 148
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E E +++ F E+G +K + D+ G KGYA +
Sbjct: 10 IFVKGFNRETTESELRAFFEEYGVVKESKIVRDKH-GVSKGYAFI 53
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 402 EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYA 497
E +++ FS FG + ++ + DRRTG KG A
Sbjct: 1079 ELELETFFSNFGPVADVRIVCDRRTGLNKGDA 1110
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNI 452
LFV + + A+EED++ FS FG I+ +
Sbjct: 216 LFVGMISKHAKEEDLRVMFSPFGTIEEL 243
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 396 AQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
A + ++ FSEFG++ + L + G +KG+A +E
Sbjct: 99 ADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIE 135
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL--DRRTGFLKGYALV 503
LF+ + +E EED++ + + + + DR T KGY V
Sbjct: 106 LFIGGLKDEHSEEDVKTALAPLSPFAPLEIKMVRDRETNKFKGYCFV 152
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 252 QEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVH 389
++ G ERG +G + S+ G G PG + L N H
Sbjct: 306 EKGTAGRLGERGKKGPFGSIGDMGPPGEPGKPGEILNLHLLKQNTH 351
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/84 (22%), Positives = 40/84 (47%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVHVKHW 548
LFV N+ + D++ F +GE+ I +++ ++ G YA V+ ++ + +
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEV--IDVDIKKQPG-NNPYAFVQFAELSS-AIQARRK 306
Query: 549 MAQIYSAKRYQLIGASSRDPLNHI 620
M + Y + +G +P+N I
Sbjct: 307 MDREYVGRNRVKVGFGKVNPINTI 330
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 267 GSAAERGNRGRYDSLAPEGDSGTPGP 344
G A G G + PEG++G PGP
Sbjct: 811 GEAGANGVSGPKGEMGPEGEAGQPGP 836
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV ++ E E ++ F +GE+ ++ + D T +G+ V
Sbjct: 16 LFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYV 60
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 458
L+V + + E+D+++ F +FGE+++I +
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISM 335
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,877,461
Number of Sequences: 59808
Number of extensions: 398268
Number of successful extensions: 1274
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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