Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0235
         (803 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    27   0.51 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   3.6  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   4.8  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   6.3  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    23   8.3  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 267 GSAAERGNRGRYDSLAPEGDSGTPGPQ 347
           G   E+G+RG    +   G+ G PGPQ
Sbjct: 591 GPQGEKGDRGDSGLMGRPGNDGLPGPQ 617



 Score = 24.6 bits (51), Expect = 3.6
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 267 GSAAERGNRGRYDSLA---PEGDSGTPGP 344
           G   +RG+ G   SL     +GD GTPGP
Sbjct: 122 GGMGDRGDPGLPGSLGYPGEKGDLGTPGP 150



 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 267 GSAAERGNRGRYDSLAPEGDSGTPGP 344
           G   E G +GR  +    G  G PGP
Sbjct: 27  GDKGEMGEQGRTGAQGNAGPPGAPGP 52



 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 267 GSAAERGNRGRYDSLAPEGDSGTPGPQ 347
           G +   G  G      P+G  G PGPQ
Sbjct: 600 GDSGLMGRPGNDGLPGPQGQRGLPGPQ 626


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 267 GSAAERGNRGRYDSLAPEGDSGTPGPQ 347
           G   E+G RG+      +G  G PGP+
Sbjct: 432 GFDGEKGERGQMGPKGGQGVPGRPGPE 458



 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 264 GGSAAERGNRGRYDSLAPEGDSGTPGPQ 347
           G + A  G  GR  +  P+G  G  GPQ
Sbjct: 398 GPAGAPGGGEGRPGAPGPKGPRGYEGPQ 425



 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 267 GSAAERGNRGRYDSLAPEGDSGTPG 341
           G   E G +G    L P G SG PG
Sbjct: 625 GLRGEPGPKGEPGLLGPPGPSGEPG 649


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 795 KIFXDKEWLKN-GNKTTPFP 739
           KIF DKE+LKN  +  TP P
Sbjct: 803 KIFDDKEYLKNIEHPITPSP 822


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 506  VETYKQAASAREALDGADILGQAISVDWCFV-KGPTKSHK 622
            V T KQA +     D   +    + VDW FV K  T  H+
Sbjct: 963  VPTVKQAVAGAAGKDEPPLQSDDVMVDWEFVEKIATNVHR 1002


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 375 VSNVHEEAQE-EDIQNQFSEFGEIKNIHLNLDRRTGFLKGY 494
           +S V   +Q+ E ++  F  FG +    LN+D+      GY
Sbjct: 687 ISVVTTSSQKIELVREAFEAFGRVSGARLNVDKTIALDVGY 727


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,398
Number of Sequences: 2352
Number of extensions: 13566
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84823812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)