Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0235
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 112 3e-25
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 42 7e-04
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 41 0.001
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 41 0.001
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 39 0.004
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.026
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 35 0.059
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 35 0.059
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 33 0.18
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 31 0.97
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 31 0.97
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 30 1.7
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 30 1.7
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 30 2.2
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 30 2.2
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 30 2.2
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 30 2.2
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 29 2.9
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.9
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 29 2.9
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 29 2.9
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 29 2.9
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 29 2.9
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 2.9
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 29 2.9
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 29 2.9
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 29 2.9
Z72517-3|CAA96695.1| 717|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z70307-3|CAA94329.1| 308|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 29 5.1
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 29 5.1
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 28 6.8
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 6.8
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 28 6.8
AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical ... 28 6.8
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 28 6.8
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 6.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 6.8
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z77655-3|CAB01134.1| 426|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical p... 28 9.0
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 112 bits (269), Expect = 3e-25
Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +3
Query: 252 QEAGGGSAAERGNRGR--YDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQF 425
+ + G A+ NR R YD + E + + PQRSVEGWI+FV+N+HEEA E+D+ ++F
Sbjct: 16 ERSRGRGLAQSRNRERITYDVVDEESSATSGAPQRSVEGWIVFVTNIHEEATEDDVHDKF 75
Query: 426 SEFGEIKNIHLNLDRRTGFLKGYALVE 506
SE+G+IKNIHLNLDRRTGFLKGYALVE
Sbjct: 76 SEYGKIKNIHLNLDRRTGFLKGYALVE 102
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 509 ETYKQAASAREALDGADILGQAISVDWCFVKGPTKSHKK 625
ET K+A A + + D+LGQ + VDWCFVKG S K+
Sbjct: 104 ETQKEANEAIDQSNDTDLLGQNVKVDWCFVKGKKTSGKR 142
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/54 (33%), Positives = 36/54 (66%)
Frame = +3
Query: 345 QRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
++ +E LF+ N+ +E+D+Q F ++GE+ + + +D++TG KG+A+VE
Sbjct: 273 EKILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVE 326
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +3
Query: 357 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+G+ ++V NV + EE+I N F+ G + N+ + DR TG +G+A VE
Sbjct: 4 QGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVE 53
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +3
Query: 354 VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+ G+ ++V N + E+D+ N FS+ G + N+ + DR TG +G+A VE
Sbjct: 1 MSGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVE 51
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
++V N + EE++ N FS G+I N+ + DR TG +G+A +E
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIE 52
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+FV + E ED+ + F+++GE+ + DR G +G+A VE
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVE 76
Score = 36.7 bits (81), Expect = 0.019
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +3
Query: 318 EGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYA 497
+G S P +S E +FV + + E+D+++ F +FG++ +I D++T + +A
Sbjct: 95 KGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
Query: 498 LV 503
+
Sbjct: 155 FI 156
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+FV + E ED+ + F+++GE+ + DR G +G+A VE
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVE 76
Score = 36.7 bits (81), Expect = 0.019
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +3
Query: 318 EGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYA 497
+G S P +S E +FV + + E+D+++ F +FG++ +I D++T + +A
Sbjct: 95 KGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
Query: 498 LV 503
+
Sbjct: 155 FI 156
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/86 (32%), Positives = 38/86 (44%)
Frame = +3
Query: 261 GGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGE 440
GGG G RGR D P P + L V N+ E+D+++ F EFGE
Sbjct: 51 GGGGGGGGGGRGRNQQY----DRENPQPSKC-----LGVFNLSSYTTEKDLRDVFGEFGE 101
Query: 441 IKNIHLNLDRRTGFLKGYALVE*RLI 518
I L DR +G +G+ + LI
Sbjct: 102 INKCDLVYDRPSGNSRGFGFIYFNLI 127
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+LFV ++ +ED++ FS FG+I N + DRR+G YA +E
Sbjct: 242 VLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIE 288
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+LFV ++ +ED++ FS FG+I N + DRR+G YA +E
Sbjct: 242 VLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIE 288
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+LFV ++ +ED++ FS FG+I N + DRR+G YA +E
Sbjct: 173 VLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIE 219
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 363 WILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
WI ++ + E D+ FS++GE+ NI+L D+ TG KG+A +
Sbjct: 39 WI-YIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFL 84
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 35.1 bits (77), Expect = 0.059
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 342 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
P + + LFV + +E+D+++ F +FG+I + D+ TG KG A +
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFL 75
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 324 DSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
DS P+ ++ LF+ + ++ E++++ F+ FGE+ + + L G KG A V
Sbjct: 111 DSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTV-LRGADGASKGCAFV 169
Query: 504 E 506
+
Sbjct: 170 K 170
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 333 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
TP +G LF+ ++ +E + ++ F+ FG I + + +DR T K + V
Sbjct: 419 TPREVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFV 475
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 35.1 bits (77), Expect = 0.059
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 342 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
P + + LFV + +E+D+++ F +FG+I + D+ TG KG A +
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFL 75
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 324 DSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
DS P+ ++ LF+ + ++ E++++ F+ FGE+ + + L G KG A V
Sbjct: 111 DSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTV-LRGADGASKGCAFV 169
Query: 504 E 506
+
Sbjct: 170 K 170
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 333 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
TP +G LF+ ++ +E + ++ F+ FG I + + +DR T K + V
Sbjct: 419 TPREVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFV 475
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 342 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
P G+ LFV N+ + + + FS+FG I N+ + D T KGYA V
Sbjct: 367 PPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFV 419
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
L ++ + + +E++++ F+ GEI++ L D+ TG GY V
Sbjct: 44 LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFV 88
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+FV NVH +A +++++ FS+FG + ++ + + G KG A V+
Sbjct: 685 VFVRNVHFQATDDELKALFSKFGTVTSVR-RVTHKDGKPKGIAFVD 729
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 315 PEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGY 494
P SG GP+R L VSN+ ++ D++ F +FG + ++ + + R KG+
Sbjct: 143 PSTSSGPDGPKR------LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGS--KGF 194
Query: 495 ALV 503
V
Sbjct: 195 GFV 197
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 315 PEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGY 494
P SG GP+R L VSN+ ++ D++ F +FG + ++ + + R KG+
Sbjct: 143 PSTSSGPDGPKR------LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGS--KGF 194
Query: 495 ALV 503
V
Sbjct: 195 GFV 197
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV ++ ++ E +++ F++FGE+ + D +T KGY V
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFV 181
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +3
Query: 270 SAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKN 449
+ AER NR S+A PG + + V N+H + E+ I++ F FG I+
Sbjct: 100 TCAER-NRAANSSVASTLGFVAPGNKGPTH---VLVENLHPKIDEKMIRDIFESFGRIEK 155
Query: 450 IHLNLD 467
I L +D
Sbjct: 156 IDLEVD 161
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +3
Query: 270 SAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKN 449
+ AER NR S+A PG + + V N+H + E+ I++ F FG I+
Sbjct: 245 TCAER-NRAANSSVASTLGFVAPGNKGPTH---VLVENLHPKIDEKMIRDIFESFGRIEK 300
Query: 450 IHLNLD 467
I L +D
Sbjct: 301 IDLEVD 306
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 402 EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
E+++ F +FG + I + +RRTG KG+A V
Sbjct: 45 EKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYV 78
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 458
++VS+VH + E D+++ F FGEI L
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQL 238
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 458
++VS+VH + E D+++ F FGEI L
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQL 238
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 458
++VS+VH + E D+++ F FGEI L
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQL 238
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+F+ + E+ ++ FG +K LN+D + G KGYA E
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAE 337
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 336 PGPQRS----VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
PG Q+S + +FV ++ E + ++ F FG++ + + D T KGY V
Sbjct: 9 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 68
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 336 PGPQRS----VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
PG Q+S + +FV ++ E + ++ F FG++ + + D T KGY V
Sbjct: 19 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 78
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 336 PGPQRS----VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
PG Q+S + +FV ++ E + ++ F FG++ + + D T KGY V
Sbjct: 122 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 181
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 336 PGPQRS----VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
PG Q+S + +FV ++ E + ++ F FG++ + + D T KGY V
Sbjct: 90 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 149
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
L + N+ + D++ F +G+I ++H+ D+ + KG+ V
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
L + N+ + D++ F +G+I ++H+ D+ + KG+ V
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 258 AGGGSAAERGNRGRYDSLA-PEGDSGTPGPQRSVEGWI-LFVSNVHEEAQEEDIQNQFSE 431
+GGG G ++ A E P++ G LFV N+ E +E +++ FS
Sbjct: 79 SGGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSP 138
Query: 432 FGEIKNIHLN 461
G+I +L+
Sbjct: 139 HGDIAECYLS 148
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 258 AGGGSAAERGNRGRYDSLA-PEGDSGTPGPQRSVEGWI-LFVSNVHEEAQEEDIQNQFSE 431
+GGG G ++ A E P++ G LFV N+ E +E +++ FS
Sbjct: 79 SGGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSP 138
Query: 432 FGEIKNIHLN 461
G+I +L+
Sbjct: 139 HGDIAECYLS 148
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 258 AGGGSAAERGNRGRYDSLA-PEGDSGTPGPQRSVEGWI-LFVSNVHEEAQEEDIQNQFSE 431
+GGG G ++ A E P++ G LFV N+ E +E +++ FS
Sbjct: 79 SGGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSP 138
Query: 432 FGEIKNIHLN 461
G+I +L+
Sbjct: 139 HGDIAECYLS 148
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+F+ + E+ ++ FG +K LN+D + G KGYA E
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAE 337
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+F+ + E+ ++ FG +K LN+D + G KGYA E
Sbjct: 268 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAE 312
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+F+ + E+ ++ FG +K LN+D + G KGYA E
Sbjct: 271 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAE 315
>Z72517-3|CAA96695.1| 717|Caenorhabditis elegans Hypothetical
protein T28F4.4 protein.
Length = 717
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 300 YDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSE 431
+ S S +P PQRS EG + +S+V E +++D + + E
Sbjct: 254 FPSSVASSASSSPAPQRSSEGILDDLSDVESENEDDDKKEEEKE 297
>Z70307-3|CAA94329.1| 308|Caenorhabditis elegans Hypothetical
protein C39E9.3 protein.
Length = 308
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 252 QEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSV 356
Q G G+ G G L P G +G PGP ++
Sbjct: 176 QSGGAGTPGNNGAPGHNGELGPCGQAGPPGPAGAI 210
>Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical
protein M199.4 protein.
Length = 233
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 279 ERGNRGRYDSLAPEGDSGTPGPQRSVEGW 365
ERG RGR P G G PGP + W
Sbjct: 30 ERGPRGREGREGPRGAQGAPGPNGTGFFW 58
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 267 GSAAERGNRGRYDSLAPEGDSGTPG 341
G +GN GR AP+G++G PG
Sbjct: 173 GQPGRKGNNGRPGQPAPQGNAGHPG 197
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 267 GSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGW 365
G G RG+ + P+GDSG PG Q+ G+
Sbjct: 209 GPNGRDGTRGQKGPIGPKGDSGPPG-QKGPSGY 240
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNI 452
ILF SN+ E + E IQ FS+F ++ +
Sbjct: 144 ILFCSNIPEGTEPEQIQTIFSQFPGLREV 172
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVHVKHW 548
+FV + ++ ++ +S+FGEI +I + D T +G+ V K V
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV--TFSGK--TEVDAA 80
Query: 549 MAQIYSAKRYQLIGASSRDPLNHIRRDDKN 638
M Q R +I + DP + RDDKN
Sbjct: 81 MKQ-----RPHIIDGKTVDPKRAVPRDDKN 105
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV ++ E ++ F +FGE+ + D T KGY V
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFV 178
>AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical
protein T25D3.2 protein.
Length = 310
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 315 PEGDSGTPGPQRSVEGWI 368
PEGD G G +R V+GWI
Sbjct: 96 PEGDDGLWGGERVVKGWI 113
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + ++ + F +FG+I+ + DR T +GY V
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFV 81
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVHVKHW 548
+FV + ++ ++ +S+FGEI +I + D T +G+ V K V
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV--TFSGK--TEVDAA 80
Query: 549 MAQIYSAKRYQLIGASSRDPLNHIRRDDKN 638
M Q R +I + DP + RDDKN
Sbjct: 81 MKQ-----RPHIIDGKTVDPKRAVPRDDKN 105
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVHVKHW 548
+FV + ++ ++ +S+FGEI +I + D T +G+ V K V
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV--TFSGK--TEVDAA 80
Query: 549 MAQIYSAKRYQLIGASSRDPLNHIRRDDKN 638
M Q R +I + DP + RDDKN
Sbjct: 81 MKQ-----RPHIIDGKTVDPKRAVPRDDKN 105
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 345 QRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRR 473
Q ++ W L + N+ + ++ED+QN S G+ I L R+
Sbjct: 89 QAKLKEWRLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRK 131
>Z77655-3|CAB01134.1| 426|Caenorhabditis elegans Hypothetical
protein C56A3.3 protein.
Length = 426
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 753 TTPFPYLAQQCSNAYSLCRTQECSLNL 673
T PF Y+AQ CS +++ +C +N+
Sbjct: 111 TLPFGYMAQTCSIYFTVAAAVDCFVNV 137
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 267 GSAAERGNRGRYDSLAPEGDSGTPG 341
G RGN GR P+G++G PG
Sbjct: 174 GQPGRRGNDGRPGQPGPQGNAGQPG 198
>Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical
protein C39E9.9 protein.
Length = 276
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 252 QEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 344
+E G+A G RG PEG G PGP
Sbjct: 230 EEGPPGAAGLDGERGDEGEPGPEGPPGIPGP 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,593,689
Number of Sequences: 27780
Number of extensions: 304725
Number of successful extensions: 1580
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -