Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0235
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 106 2e-23
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 50 2e-06
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 48 1e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 46 4e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 1e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 44 2e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 44 2e-04
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 42 5e-04
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 42 5e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 40 0.003
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 40 0.003
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 39 0.003
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 39 0.003
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 39 0.003
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 39 0.004
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 39 0.004
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 38 0.006
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.008
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.008
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.008
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.008
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 38 0.008
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 38 0.010
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 38 0.010
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 38 0.010
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.014
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 37 0.014
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 37 0.018
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 36 0.024
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 36 0.024
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 36 0.031
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 36 0.031
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 36 0.031
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.031
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 35 0.055
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.055
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 35 0.055
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 35 0.073
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 35 0.073
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 35 0.073
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 35 0.073
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 35 0.073
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 35 0.073
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 35 0.073
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 35 0.073
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 35 0.073
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 35 0.073
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 34 0.096
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 34 0.096
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 34 0.096
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 34 0.096
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 34 0.096
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 34 0.096
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 34 0.096
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 34 0.096
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 34 0.096
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.096
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.096
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 34 0.13
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 34 0.13
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 34 0.13
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 34 0.13
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.17
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 33 0.17
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 33 0.17
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.17
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.17
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 33 0.17
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.22
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.22
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.22
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.22
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 33 0.22
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.22
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.22
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 33 0.29
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 33 0.29
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 33 0.29
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 33 0.29
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 33 0.29
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 32 0.39
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 32 0.39
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.39
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.39
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 32 0.39
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 32 0.39
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 32 0.39
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 32 0.39
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 32 0.51
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.51
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.51
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 32 0.51
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 32 0.51
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.68
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 31 0.68
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 31 0.68
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.68
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 31 0.68
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 31 0.68
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 31 0.90
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 31 0.90
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 31 1.2
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 31 1.2
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 31 1.2
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 31 1.2
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 31 1.2
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 1.2
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 31 1.2
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 1.2
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 1.2
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 30 1.6
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 30 1.6
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 30 1.6
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 30 1.6
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 30 1.6
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 30 1.6
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 30 1.6
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 30 1.6
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.6
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 30 2.1
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 30 2.1
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 30 2.1
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 30 2.1
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 30 2.1
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 30 2.1
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 30 2.1
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 2.7
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 29 3.6
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 29 3.6
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 29 3.6
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 3.6
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 3.6
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 29 3.6
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 29 3.6
At1g09890.1 68414.m01113 expressed protein ; expression supporte... 29 3.6
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 29 4.8
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 29 4.8
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 29 4.8
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 28 6.3
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 28 8.3
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 28 8.3
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 28 8.3
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 28 8.3
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 106 bits (254), Expect = 2e-23
Identities = 45/62 (72%), Positives = 53/62 (85%)
Frame = +3
Query: 321 GDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 500
G G PGPQRSVEGWI+ VS VHEE QEEDI N F +FGEIKN++LNLDRR+G++KGYAL
Sbjct: 81 GSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYAL 140
Query: 501 VE 506
+E
Sbjct: 141 IE 142
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +2
Query: 509 ETYKQAASAREALDGADILGQAISVDWCFVKGPTKSHKKRR 631
E ++A SA A++GA++L Q +SVDW F GP+ RR
Sbjct: 144 EKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGGESYRR 184
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +3
Query: 288 NRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLD 467
N R+ L+P+ +S TP ++ LFVS + + E ++ F++FGE+ + + D
Sbjct: 31 NASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTD 90
Query: 468 RRTGFLKGYALV 503
R +G+ KG+ V
Sbjct: 91 RVSGYSKGFGFV 102
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 47.6 bits (108), Expect = 1e-05
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 273 AAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQN----QFSEFGE 440
A ERG RG + P+ + G E I FV E+DI+N FS GE
Sbjct: 372 AQERGERGERPAFTPQSGNFRSGGDGGDEKKI-FVKGFDASLSEDDIKNTLREHFSSCGE 430
Query: 441 IKNIHLNLDRRTGFLKGYALVE 506
IKN+ + +DR TG KG A +E
Sbjct: 431 IKNVSVPIDRDTGNSKGIAYLE 452
Score = 35.5 bits (78), Expect = 0.042
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 333 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
TP + LF +N+ + D++N F E GE+ ++ + +R G +G+ VE
Sbjct: 287 TPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVE 344
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
LFVS ++ E+ E I+ +F +G IK +HL D+ T KGYA +E
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +3
Query: 285 GNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 464
G RGR S +P G G G R + +L V N+ + ++ED++ F +FG +K+I+L
Sbjct: 15 GRRGR--SPSPRGRYG--GRSRDLPTSLL-VRNLRHDCRQEDLRKSFEQFGPVKDIYLPR 69
Query: 465 DRRTGFLKGYALVE 506
D TG +G+ V+
Sbjct: 70 DYYTGDPRGFGFVQ 83
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = +3
Query: 255 EAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWIL-----FVSNVHEEAQEEDIQN 419
EAGG + G D++ EGD ++V +L FV N+ A EE++
Sbjct: 225 EAGGVGKDDDG-----DAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELME 279
Query: 420 QFSEFGEIKNIHLNLDRRTGFLKGYALV 503
FS FG+I +HL LD+ T +G A +
Sbjct: 280 HFSTFGKISEVHLVLDKETKRSRGIAYI 307
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +3
Query: 285 GNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 464
G RGR S +P G G G + S L V N+ + ++ED++ F +FG +K+I+L
Sbjct: 15 GRRGR--SPSPRGRFG--GSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPR 70
Query: 465 DRRTGFLKGYALVE 506
D TG +G+ ++
Sbjct: 71 DYYTGDPRGFGFIQ 84
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = +3
Query: 264 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 443
G S A RGR P + +P + E +L V ++ E ++ F FGE+
Sbjct: 65 GKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEV 124
Query: 444 KNIHLNLDRRTGFLKGYALVE 506
++ + +DR +G+ VE
Sbjct: 125 IHVEIAMDRAVNLPRGHGYVE 145
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = +3
Query: 264 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 443
G S A RGR P + +P + E +L V ++ E ++ F FGE+
Sbjct: 65 GKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEV 124
Query: 444 KNIHLNLDRRTGFLKGYALVE 506
++ + +DR +G+ VE
Sbjct: 125 IHVEIAMDRAVNLPRGHGYVE 145
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/86 (27%), Positives = 39/86 (45%)
Frame = +3
Query: 246 FWQEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQF 425
+ E GGG ++R G S SG+ S G L+V N+ + ++N F
Sbjct: 210 YGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLF 269
Query: 426 SEFGEIKNIHLNLDRRTGFLKGYALV 503
+E G++ + DR +G KG+ V
Sbjct: 270 NEQGKVVEARVIYDRDSGRSKGFGFV 295
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/86 (27%), Positives = 39/86 (45%)
Frame = +3
Query: 246 FWQEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQF 425
+ E GGG ++R G S SG+ S G L+V N+ + ++N F
Sbjct: 218 YGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLF 277
Query: 426 SEFGEIKNIHLNLDRRTGFLKGYALV 503
+E G++ + DR +G KG+ V
Sbjct: 278 NEQGKVVEARVIYDRDSGRSKGFGFV 303
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 285 GNRGRYDSLAPE----GDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNI 452
G RGR P G G G +R L V N+ + + E+++ F FG ++++
Sbjct: 17 GGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDV 76
Query: 453 HLNLDRRTGFLKGYALVE 506
++ D +G +G+A VE
Sbjct: 77 YIPRDYYSGQPRGFAFVE 94
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = +3
Query: 372 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
F S++ E+ ++++++ FS+ GE+ +H+ DR TG +G+A ++
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 333 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
TP Q LF N+ + DI+N F E GE+ ++ L+ G KGY +E
Sbjct: 374 TPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLS-SFDDGSFKGYGHIE 430
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 500
++VSNV + + + FS FGEI+ L LD+ TG KG+AL
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFAL 272
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + + + + + + F ++GEI++ +D+ +G KGY +
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFI 174
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 357 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
EG +FV + E + D++ FS FG+I + + L+R TG +G+ +
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFI 53
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = +3
Query: 306 SLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 485
S AP G SG P +S L+VSN+ DI FS FG++ + + DR T
Sbjct: 42 SSAPGGGSGGLAPSKST----LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQS 97
Query: 486 KGYALV 503
+G A V
Sbjct: 98 RGVAFV 103
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 321 GDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 500
G T P +FV+NVH A ++ + F++FGE+ + D TG G A
Sbjct: 502 GTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAY 561
Query: 501 VE 506
+E
Sbjct: 562 IE 563
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 330 GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
G GP + + L V N+ +D+ F+++G++ ++ + DRRTG +G+A V
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFV 62
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 330 GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
G GP + + L V N+ +D+ F+++G++ ++ + DRRTG +G+A V
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFV 62
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 AGGGSAAERGNRGRYDSLAPE-GDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEF 434
+ G + N G S P G + T P + + L++ + +++ + N FS F
Sbjct: 444 SSGSNPPWANNAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSF 503
Query: 435 GEIKNIHLNLDRRTGFLKGYALVE 506
GEI + DR TG KGY V+
Sbjct: 504 GEIVMAKVIKDRVTGLSKGYGFVK 527
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 AGGGSAAERGNRGRYDSLAPE-GDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEF 434
+ G + N G S P G + T P + + L++ + +++ + N FS F
Sbjct: 444 SSGSNPPWANNAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSF 503
Query: 435 GEIKNIHLNLDRRTGFLKGYALVE 506
GEI + DR TG KGY V+
Sbjct: 504 GEIVMAKVIKDRVTGLSKGYGFVK 527
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/73 (34%), Positives = 33/73 (45%)
Frame = +3
Query: 288 NRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLD 467
N G YD P GDS G LFV + E+ ++ S++G IKN+ L
Sbjct: 46 NAGLYD---PSGDSKAVGDPYCT----LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRH 98
Query: 468 RRTGFLKGYALVE 506
TG +GY VE
Sbjct: 99 IVTGASRGYGFVE 111
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 500
++VSNV E + + FS+FGEI+ L LD+ TG KG+ L
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCL 290
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + + + E + F ++GEI++ D+ +G KGY +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 500
++VSNV E + + FS+FGEI+ L LD+ TG KG+ L
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCL 290
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + + + E + F ++GEI++ D+ +G KGY +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 500
++VSNV E + + FS+FGEI+ L LD+ TG KG+ L
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCL 290
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + + + E + F ++GEI++ D+ +G KGY +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+F+ + + EED+++ E GEI + L DR +G KGYA V
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFV 162
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +3
Query: 312 APEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKG 491
A G G GP S L+V N+H E+D++ F FG ++ + + D TG KG
Sbjct: 269 AAAGAGGMLGPY-SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKG 326
Query: 492 YALVE 506
+ V+
Sbjct: 327 FGFVQ 331
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +3
Query: 318 EGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
+G+SG P + +FV V + E+D+++ F +FGE+ ++ + +R GF++
Sbjct: 267 QGNSGESDPTNTT----IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQ 319
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
L+V N+H E ++ F FG ++ + L LD TG KG+ ++
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQ 312
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 36.3 bits (80), Expect = 0.024
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVHVKHW 548
LFVS + + + DI + FS+ GE+ N+ + L TG AL+ L+ + H K
Sbjct: 66 LFVSELSRQTKISDIIDFFSDVGEVVNVRICLS-HTGSCCVLALLSFLLLVRQTRHWKRR 124
Query: 549 MAQIYSAKRYQL 584
M I + KR+ L
Sbjct: 125 MVNICTIKRFLL 136
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
LFV+N+ + Q DI N F + GE+ ++ L ++ + G G+ VE
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQ-GKHAGWGFVE 293
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 309 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
LA G+ GT + ++V+NV + + + N F +G+++ L D+ TG +
Sbjct: 149 LAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSR 208
Query: 489 GYAL 500
G+AL
Sbjct: 209 GFAL 212
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVHVK 542
LF+ + + E +++ FS +G+++ + LD+ TG KGY V ++ L+ +K
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 309 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
LA G+ GT + ++V+NV + + + N F +G+++ L D+ TG +
Sbjct: 149 LAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSR 208
Query: 489 GYAL 500
G+AL
Sbjct: 209 GFAL 212
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVHVK 542
LF+ + + E +++ FS +G+++ + LD+ TG KGY V ++ L+ +K
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.9 bits (79), Expect = 0.031
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 273 AAERGNRGRYDSLAPEGDSGTPGPQRSVEG--WILFVSNVHEEAQEEDIQNQFSEFGEIK 446
AA G + +L G G G E +FV + + EED+ FS+FGE+
Sbjct: 295 AAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVV 354
Query: 447 NIHLNLDRRTGFLK 488
++ + + + GF++
Sbjct: 355 SVKIPVGKGCGFVQ 368
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.9 bits (79), Expect = 0.031
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 267 GSAAERGNRGRYDSLAPEGDSGT-PGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 443
G A R G Y +GT P+ + +FV + +ED++ F+EFGEI
Sbjct: 272 GPATPRKTNG-YQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEI 330
Query: 444 KNIHLNLDRRTGFLK 488
++ + + + GF++
Sbjct: 331 VSVKIPVGKGCGFVQ 345
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 35.1 bits (77), Expect = 0.055
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 339 GPQRSVE-GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
G S+E G L++SN+ EDI+ FSE G++K ++ D R+G KG A V
Sbjct: 99 GGGSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEV 153
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 372 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
FV + E+ I+ F+EFGE+ + + +DR TG KG+ V
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFV 90
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E Q E ++ F ++GEI + D+ TG KGY V
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFV 70
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 34.7 bits (76), Expect = 0.073
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
LFV +V A EE+I+ F + G + + L D+RTG +G V+
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVK 167
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLD-----RRTGFLK 488
LFV +++++A E++++ F +FG +++++L D R GF+K
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVK 257
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 34.7 bits (76), Expect = 0.073
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
LFV +V A EE+I+ F + G + + L D+RTG +G V+
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVK 167
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLD-----RRTGFLK 488
LFV +++++A E++++ F +FG +++++L D R GF+K
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVK 257
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 34.7 bits (76), Expect = 0.073
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
LF+ + E+ +++ FS FGE+ + + D+ +G +G+ V+
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVD 88
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 34.7 bits (76), Expect = 0.073
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LF+ + + EE ++ FS FGE+ + DR TG +G+ V
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFV 52
Score = 31.1 bits (67), Expect = 0.90
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Frame = +3
Query: 297 RYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 476
R +S + +G G PG R + FV + E D + F +FG ++ + D T
Sbjct: 91 RSNSSSIQGSPGGPGRTRKI-----FVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNT 145
Query: 477 GFLKGYALV---E*RLINKPLVHVKH----WMAQIYSAKRYQLIGASSRDPL 611
+G+ + + K L+ H M ++ A +L SR PL
Sbjct: 146 QRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPL 197
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 34.7 bits (76), Expect = 0.073
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LF+ + + EE ++ FS FGE+ + DR TG +G+ V
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFV 52
Score = 31.1 bits (67), Expect = 0.90
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Frame = +3
Query: 297 RYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 476
R +S + +G G PG R + FV + E D + F +FG ++ + D T
Sbjct: 91 RSNSSSIQGSPGGPGRTRKI-----FVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNT 145
Query: 477 GFLKGYALV---E*RLINKPLVHVKH----WMAQIYSAKRYQLIGASSRDPL 611
+G+ + + K L+ H M ++ A +L SR PL
Sbjct: 146 QRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPL 197
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 34.7 bits (76), Expect = 0.073
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E Q + ++ F +FGEI + D+ TG KGY V
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFV 68
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E ++ FS++GE+ + + +DR TG +G+A V
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFV 80
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
+FV + +ED++ FSEFGEI ++ + + + GF++
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQ 347
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +3
Query: 264 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 443
G +A+++G G+ DS T +FV + ++ ++N FS++GEI
Sbjct: 230 GPAASKKGVTGQRDSYQSSAAGVTT--DNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEI 287
Query: 444 KNIHLNLDRRTGFLK 488
++ + +R GF++
Sbjct: 288 VHVKIPAGKRCGFVQ 302
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +3
Query: 264 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 443
G +A+++G G+ DS T +FV + ++ ++N FS++GEI
Sbjct: 230 GPAASKKGVTGQRDSYQSSAAGVTT--DNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEI 287
Query: 444 KNIHLNLDRRTGFLK 488
++ + +R GF++
Sbjct: 288 VHVKIPAGKRCGFVQ 302
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 34.3 bits (75), Expect = 0.096
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LF+ + E+ ++ F+++GE+ + + LDR TG +G+ V
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFV 86
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 34.3 bits (75), Expect = 0.096
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 360 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
G L++SN+ EDI+ F+E GE+K ++ D R+G KG A V
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEV 131
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 34.3 bits (75), Expect = 0.096
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 360 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
G L++SN+ EDI+ F+E GE+K ++ D R+G KG A V
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEV 67
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 34.3 bits (75), Expect = 0.096
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 360 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
G L++SN+ EDI+ F+E GE+K ++ D R+G KG A V
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEV 133
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 354 VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+E LF+ + E E+ +++ F FGE+ + DR TG +G+ V
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFV 52
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 330 GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
G+PGP S + +FV + E + + F++FG I ++ + D RT +G+ +
Sbjct: 98 GSPGPSNSKK---IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFI 152
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 354 VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+E LF+ + E E+ +++ F FGE+ + DR TG +G+ V
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFV 52
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 330 GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
G+PGP S + +FV + E + + F++FG I ++ + D RT +G+ +
Sbjct: 98 GSPGPSNSKK---IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFI 152
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 34.3 bits (75), Expect = 0.096
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = +3
Query: 309 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
L P G GP R +FV + E ++ FG +K L DR TG K
Sbjct: 347 LTPGASGGLEGPDR------IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 489 GYA 497
GYA
Sbjct: 401 GYA 403
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 34.3 bits (75), Expect = 0.096
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = +3
Query: 309 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
L P G GP R +FV + E ++ FG +K L DR TG K
Sbjct: 347 LTPGASGGLEGPDR------IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 489 GYA 497
GYA
Sbjct: 401 GYA 403
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 34.3 bits (75), Expect = 0.096
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = +3
Query: 309 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
L P G GP R +FV + E ++ FG +K L DR TG K
Sbjct: 347 LTPGASGGLEGPDR------IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 489 GYA 497
GYA
Sbjct: 401 GYA 403
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 34.3 bits (75), Expect = 0.096
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 500
L+V + ++D++ +FS+FG+I++ +R+T F+ Y +
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEM 295
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 34.3 bits (75), Expect = 0.096
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+LFV +H + +I++ S++G +K I +R +G KGY VE
Sbjct: 203 MLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVE 249
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 330 GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
G+PGP S + +FV + E + + F++FG I ++ + D RT +G+ +
Sbjct: 25 GSPGPSNSKK---IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFI 79
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+L V + E+A EE ++ +FS+ IK++ L D+ T +G+A V
Sbjct: 459 VLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFV 504
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
++V + + E D+ FS++GEI +++L D+ TG KG+A +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFL 82
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E Q E ++ F ++G+I + D+ TG KGY V
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFV 70
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +3
Query: 285 GNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 464
G R + AP G P+ + ++V N+ + ++ FSE G++ + +
Sbjct: 181 GRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVS 240
Query: 465 DRRTGFLKGYALVE 506
DR TG +G+ V+
Sbjct: 241 DRETGRSRGFGFVQ 254
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 372 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
F+SN+ +AQEEDI+ F + G + +I + + TG +G A +
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYAD 698
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 372 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
F+SN+ +AQEEDI+ F + G + +I + + TG +G A +
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYAD 698
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.5 bits (73), Expect = 0.17
Identities = 11/40 (27%), Positives = 26/40 (65%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
+FV + + +ED++ FS+FGE+ ++ + + + GF++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQ 362
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/81 (22%), Positives = 38/81 (46%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVHVKHW 548
+FV ++ + A EED++ F GE+ + + + +T KG A + + + VK
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 549 MAQIYSAKRYQLIGASSRDPL 611
+ + + K+ + + D L
Sbjct: 276 KSPMINGKKCGVTASQDNDTL 296
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV V E E N F +FGE+ + + DR TG +G+ V
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFV 112
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + +E++++N F +G+I + D TG +G+ V
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFV 203
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 372 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
FV + +ED+Q FS+FG++ + + DR +G +G+ V
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 372 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
FV + +ED+Q FS+FG++ + + DR +G +G+ V
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 372 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
FV + +ED+Q FS+FG++ + + DR +G +G+ V
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 372 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
FV + +ED+Q FS+FG++ + + DR +G +G+ V
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFVS + E +Q+ F+ FG++ + + DR +G KG+ V
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFV 80
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E ++++ F +FGEI + D+ TG KGY V
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFV 63
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E ++++ F +FGEI + D+ TG KGY V
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFV 63
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV + E ++ FSEFG++ N+ + + RT GY V
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 104
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV + E ++ FSEFG++ N+ + + RT GY V
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 123
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + +E+++ F +GEI+ + +D+ TG KGY V
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFV 454
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+LFV ++ ++ED+ FS FG + + + D +TG YA +E
Sbjct: 244 VLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIE 290
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E ++++ F +FGEI + D+ TG KGY V
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFV 63
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+++ NV EE + FS GEIK I + LD+ T G+ V
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+ V N+ E+ ++ +FS FGEI + L D KGYA ++
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQ 87
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV + E E+ ++ F+ +GE+ + D+ TG +G+ V
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFV 52
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/46 (30%), Positives = 30/46 (65%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
LF+ N+ + +E+++ +F+ FGE++++ L L + T +G A V+
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVK 608
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 372 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 464
+V N+ + +E D++N FS+FG++ IH N+
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDV--IHSNV 39
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E +E ++ F +FGEI + D+ +G KGY V
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 59
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E +E ++ F +FGEI + D+ +G KGY V
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 59
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E +E ++ F +FGEI + D+ +G KGY V
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 59
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + +++ + F +FGE+K + D TG +G+ V
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFV 176
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E + F ++GEI + + DR+TG +G+ V
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFV 88
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/47 (23%), Positives = 27/47 (57%)
Frame = +3
Query: 366 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+L++ + E +I+ FS+FG +K + + +++TG K + ++
Sbjct: 61 VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQ 107
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +3
Query: 300 YDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTG 479
YD+ A G P R + G +FV + +EA +D+++ F FG I++ ++ D +
Sbjct: 221 YDNPATFYGRGEP-TTRGI-GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRS 278
Query: 480 FLKGYALV 503
+G+ V
Sbjct: 279 GHRGFGFV 286
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV+ + E D ++ F +GEI ++++ D + +G +
Sbjct: 93 IFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFI 137
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 312 APEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKG 491
AP G P+ + ++V N+ + ++ FSE G++ + DR TG +G
Sbjct: 227 APRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 286
Query: 492 YALV 503
+ V
Sbjct: 287 FGFV 290
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 309 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 485
L G+ GT L+V ++ E+DI++QF GEI++I + D+ F+
Sbjct: 210 LGKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFV 268
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 360 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
G LFV ++H + +++ + ++G +K + ++ +G KGY VE
Sbjct: 233 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVE 281
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFVS + ++ ++ FS FG+IK L D T KG+ +
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFI 53
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVHVKHW 548
++V NV+ EE+++ FS+ G I + L D + G KG+ V + + VK +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 549 MAQIYSAK 572
Q++ K
Sbjct: 365 HGQMFHGK 372
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
L++ N+ + E+ ++ +F+EFG+I ++ + D +GYA V
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFV 246
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 309 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 485
L G+ GT L+V ++ E+DI++QF GEI++I + ++ F+
Sbjct: 210 LGKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFV 268
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LF+ N+ E +++++ F FG++ + + +D+ TG K + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFI 385
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 458
LFV + + E ++Q+ FSE+G IK++ +
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQI 140
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LF+ N+ E +++++ F FG++ + + +D+ TG K + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFI 376
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 458
LFV + + E ++Q+ FSE+G IK++ +
Sbjct: 102 LFVGMLPKNVSETEVQSLFSEYGTIKDLQI 131
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E + ++N F +FG+I + D+ +G KGY V
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFV 53
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E + ++N F +FG+I + D+ +G KGY V
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFV 53
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSE-FGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVHVKH 545
+FV ++ E + + + F +G +K + LDR TG KGY V N+ + +
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 546 WMAQIYSAKRYQLIGASSRDPL 611
Q S + ++ A++++ L
Sbjct: 216 MNGQYCSTRPMRIGPAANKNAL 237
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/40 (22%), Positives = 25/40 (62%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
+FV + ++++++ F +FGE+ ++ + +R GF++
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQ 301
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
++V + ++E + N F FGEI ++++ DR T +GY V
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFV 59
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 342 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
P SVE +LFV+N+ + + DI + F+ GE+ +I L ++ G GY VE
Sbjct: 238 PPNSVEE-VLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVE 290
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 342 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 485
PQ + ILFV NV ++ ++ F +FG+++ +H + GF+
Sbjct: 204 PQGEILSRILFVRNVDSSIEDCELGVLFKQFGDVRALH-TAGKNRGFI 250
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +3
Query: 297 RYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNI-----HLN 461
R D+ PE ++ P + EG I FV N+ ++ + + F +FG I+N+ H
Sbjct: 144 RSDTKPPEEETRNPQQEFRQEGKI-FVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHE 202
Query: 462 LDRRTGF 482
+++ GF
Sbjct: 203 VEKNAGF 209
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +3
Query: 357 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE*RLINKPLVH 536
EG LF+ N+ E ++++ F FG + + + +D+ TG K + + L+ PL+
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFDLV-FPLLK 404
Query: 537 VKH 545
+ H
Sbjct: 405 LVH 407
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 357 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
EG LF+ N+ E ++++ F FG + + + +D+ TG K + V
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFV 395
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LF+ + + E ++ FS FGE+ + + ++ TG +G+ V
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFV 52
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 309 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
L+ G GP R +FV + E I+ FG ++ +L DR TG K
Sbjct: 363 LSSGSTGGLEGPDR------IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSK 416
Query: 489 GYA 497
GYA
Sbjct: 417 GYA 419
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + EE+ +N F +FG I ++ + D T +G+ +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + EE+ +N F +FG I ++ + D T +G+ +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + EE+ +N F +FG I ++ + D T +G+ +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 360 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDR 470
G L V+N+ + EDI+ FSE GE++ ++ D+
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDK 128
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV + + ++ F+ FGE+ + DR TG +G+ V
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV + + ++ F+ FGE+ + DR TG +G+ V
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
LF++ + E+ ++ F FGE+ + + +D+ + KGYA +E
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLE 329
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 372 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
FV + ++ E+D+ + FS+FG + + + DR TG + + V
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFV 53
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
++V N+ Q + ++N FS+FG I + + DR+TG + +A +
Sbjct: 214 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFL 258
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LF+ + + +++ F+ FG++ + + +DR TG +G+ V
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LF+ + + +++ F+ FG++ + + +DR TG +G+ V
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV + + EE + FS++G++ + + +D+ KG+A V
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYV 67
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + + E+++ F +GEI + +D+ TG KG+ V
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFV 209
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E E + F +GEI+ + +D+ TG KG+ V
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFV 150
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E E + F +GEI+ + +D+ TG KG+ V
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFV 150
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +3
Query: 360 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDR 470
G ++++N+ + EDI+ ++E GE+K ++ D+
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDK 142
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E ++ F FG+I + + LDR +G +G+ V
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFV 82
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 309 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 458
L G+ GT P L+V ++ E+DI + F +GE+++I +
Sbjct: 207 LRKAGEMGTLEPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
L+++N+ + EE + FS+FG++ L D R G +G+A +E
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIE 63
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV N+ +D++ F +FG++ + ++ + G KGY +
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFI 58
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = +3
Query: 270 SAAERGNRGRYDSLAPEGDSGTPG------PQRSVEGWILFVSNVHEEAQEEDIQNQFSE 431
S + +RG ++ P T G P LFV N++ ++ ++ F
Sbjct: 148 SGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEP 207
Query: 432 FGEIKNIHLNLDRRTGFL 485
FGEI++++ R GF+
Sbjct: 208 FGEIRSLYTACKSR-GFV 224
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = +3
Query: 270 SAAERGNRGRYDSLAPEGDSGTPG------PQRSVEGWILFVSNVHEEAQEEDIQNQFSE 431
S + +RG ++ P T G P LFV N++ ++ ++ F
Sbjct: 161 SGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEP 220
Query: 432 FGEIKNIHLNLDRRTGFL 485
FGEI++++ R GF+
Sbjct: 221 FGEIRSLYTACKSR-GFV 237
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 288 NRGRYDSLAPEGDS-GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 464
+RG S G G G + G ++V N+ + +++ FSE G++ +
Sbjct: 178 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 237
Query: 465 DRRTGFLKGYALV 503
DR +G KG+ V
Sbjct: 238 DRDSGRSKGFGFV 250
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +3
Query: 327 SGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
S +P S L+VS + E+ +++ F +FG + ++++ +D+ KG+A +
Sbjct: 65 SSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFL 123
>At1g09890.1 68414.m01113 expressed protein ; expression supported
by MPSS
Length = 633
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +3
Query: 279 ERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 458
E NRG +D + G SGT G ++G V +EE E ++ E K + L
Sbjct: 50 EEVNRGYWDLVW--GGSGTAGGFDVIKGSNFEVIVKNEEQIELSFTRKWDPSQEGKAVPL 107
Query: 459 NLDRRTGFLKG 491
N+D+R L G
Sbjct: 108 NIDKRFVMLSG 118
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +3
Query: 342 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 488
P+ V + V+N+ + EE+++ FS+ GE+ + + + G+++
Sbjct: 230 PESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQ 278
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 506
+++ NV E + + + + G + ++H+ D+ T KG+A E
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAE 54
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LFV N+ E + F E G++ + D TG +GY V
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
LF ++ E ++ + F+ F + D+RTG KGY V
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFV 183
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+FV + E + +N F +FG I ++ + D T +G+ +
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 168
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 503
+++ + +A E D++ GE+ + + ++ +G KGYA V
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFV 138
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 485
LFV N++ ++ ++ F ++G+I+ ++ R GF+
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHR-GFV 207
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +3
Query: 369 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 485
LFV N++ ++ ++ F ++G+I+ ++ R GF+
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHR-GFV 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,213
Number of Sequences: 28952
Number of extensions: 279913
Number of successful extensions: 939
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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