Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0234
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    58   6e-11
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    58   6e-11
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 58.4 bits (135), Expect = 6e-11
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = +3

Query: 3   SAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 95
           +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 270 NAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 58.4 bits (135), Expect = 6e-11
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = +3

Query: 3   SAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 95
           +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 270 NAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 675 QSTKCQRYHNQ 643
           ++T+C RYHNQ
Sbjct: 415 RNTRCGRYHNQ 425


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 85  LISSYKTSTKAPPVPLRTLEKAPL 14
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 496  IVYFNLSFVGIENFHFFLHSGS 561
            I+YF + +  I  FH+ L S S
Sbjct: 1529 ILYFTIQYRPINEFHWTLVSNS 1550


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 496  IVYFNLSFVGIENFHFFLHSGS 561
            I+YF + +  I  FH+ L S S
Sbjct: 1525 ILYFTIQYRPINEFHWTLVSNS 1546


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 339 KKRLYNMKAIEMSKLEKFTSVRTSNYVTLIKQ*IMESLYN 220
           K+R  + +  E SK  K  S  ++NY++ I     ++ YN
Sbjct: 64  KERSRDKRERERSKERKIISSLSNNYISNISNYNNDNNYN 103


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 134 DSVSQPLPSDHVLLDTKTTLVTYF*LNKVLYNDSIIYCFIS 256
           D+V+Q   S  + L     L +Y   N  +Y D++I C ++
Sbjct: 282 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVN 322


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 134 DSVSQPLPSDHVLLDTKTTLVTYF*LNKVLYNDSIIYCFIS 256
           D+V+Q   S  + L     L +Y   N  +Y D++I C ++
Sbjct: 335 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVN 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,125
Number of Sequences: 438
Number of extensions: 3260
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)