Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0233
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.5  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   9.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   9.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 320 TNEKTFDDIV-KWLRNIDEHANEDVEKMILGNK 415
           T    F ++  K+ RNIDE+ N D++     NK
Sbjct: 355 TEPTLFSNVTPKFPRNIDEYNNNDLDTKKWNNK 387


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 432 FSSISHL-LPSIIFSTSSFACSSIFRNHLTISSNVFSFVMSYTSMMPIAPR*YDVVMV 262
           F SI+ + L SIIF  S F C    R    ++    SF++ +  ++ IA   Y  ++V
Sbjct: 50  FPSITLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLL-FILLVQIAVAVYAFIVV 106


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 149 HNDFYFDDRY 178
           HN FYFD RY
Sbjct: 214 HNFFYFDPRY 223


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 308 VYDITNEKTFDDIVKWLRNIDEHAN 382
           +Y     +T+D +  W   +DEH+N
Sbjct: 256 LYTRDQSETYDVLRSWRNLMDEHSN 280


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -3

Query: 741 WGLCHXSWLTSEC 703
           WG C+  W T  C
Sbjct: 98  WGSCNNYWNTKNC 110


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 550 PPLVPRKLCLYLCS 509
           P +VP+ LC+ +C+
Sbjct: 55  PNVVPKPLCIKICA 68


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 550 PPLVPRKLCLYLCS 509
           P +VP+ LC+ +C+
Sbjct: 55  PNVVPKPLCIKICA 68


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 136 ENLNNMHVFPTPESPMRSSLNNK 68
           +  +NM + PTP + +R +  N+
Sbjct: 179 QKAHNMELEPTPGNTLRQTFENQ 201


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 504 ADVSMKRMPCSRAIASPRSL 445
           A+   K+MPC++  ++P++L
Sbjct: 305 AEKDPKKMPCTQPPSAPQNL 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,433
Number of Sequences: 438
Number of extensions: 4218
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)