Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0231
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698...    66   2e-11
04_01_0359 + 4711289-4713052,4713423-4713950                           29   5.6  
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727...    28   9.7  
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405...    28   9.7  
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759           28   9.7  

>02_02_0120 +
           6984482-6984643,6984748-6984797,6984936-6984996,
           6985574-6985669,6985754-6985903,6986208-6986339,
           6986641-6986768,6987285-6987327,6987935-6988018,
           6989049-6989090,6989264-6989334,6989621-6989674,
           6989789-6989894,6990038-6990106,6990824-6990967,
           6992038-6992113,6992295-6992353
          Length = 508

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
 Frame = +1

Query: 304 EVPLSLFATNRRRLANKLK-----SGQ----IVVLQGGEDVNHYDTDVQYVFRQEAYFTW 456
           EVP+ L A NR RL   L+     SG+    +V+LQGGE+   Y TD   +FRQE+YF +
Sbjct: 19  EVPMELHAGNRDRLVAALRAHLSASGRPLRGLVLLQGGEEQTRYCTDHLELFRQESYFAY 78

Query: 457 VCGVREPGCYFALDVSTASLTSLCPDFLRSMKSGWANSMACSDFKNIYAVD 609
           + GVREPG Y A+D+ +       P                S FK+ Y VD
Sbjct: 79  LFGVREPGFYGAIDIVSGQSILFSPRLPADYAVWMGEIKPLSYFKDRYKVD 129


>04_01_0359 + 4711289-4713052,4713423-4713950
          Length = 763

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 602 QLMKSIMXAEIKDVLQSLMPETLLTLSGPKPQTSGLDGPRRP 727
           QLM+  + A+ +D+L++    T+ T +    QT+  DG RRP
Sbjct: 349 QLMREKLAAQHRDLLRAKHETTMATEARNSFQTAMYDGMRRP 390


>12_02_0811 -
           23370455-23370472,23372279-23372538,23372645-23372713,
           23372979-23373105,23373187-23373422,23373509-23373678,
           23373855-23373935,23374013-23374084,23374273-23374344,
           23374450-23374588,23375141-23375643,23376817-23377010,
           23377952-23378488
          Length = 825

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 254 ADHRTWQRRGLWALALLKCRYLCSQQTD 337
           A HR W+RR L  L LL C  +  QQ D
Sbjct: 7   AVHRRWRRRLLPKLMLLLCAVVHGQQPD 34


>12_02_0786 +
           23139854-23139901,23140054-23140122,23140531-23140544,
           23140603-23140675,23140875-23140979,23141817-23142080,
           23142159-23142251,23142381-23142587,23143155-23143258,
           23143436-23143502,23143576-23143683,23143943-23144033,
           23144123-23144193,23144421-23144549,23144659-23144766
          Length = 516

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +1

Query: 334 RRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTAS 513
           R++L   L    + ++   E     D  V Y FRQ   + ++ G  +PG    L   T  
Sbjct: 123 RKKLLEVLPEKSLAIIASAEQQMMTDV-VPYSFRQNGDYLYITGCAQPGGVAVLSEET-G 180

Query: 514 LTSLCPD 534
           L    PD
Sbjct: 181 LCMFMPD 187


>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
          Length = 417

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = -2

Query: 770 GSIPTWNSSNSH*KMAFSGRQAHWSVVWAQTMSAMFPASNFGVHLLSQXT**TSSTAYMF 591
           G      SS+SH   A  G Q  W V+   T SA    S  G    S  +  T++T Y  
Sbjct: 341 GGAKMQRSSSSHAAAAQRGAQFPWPVIKLDTSSASLKDSECG----STSSVLTAATVYSR 396

Query: 590 LKSLQAMEFAHPDF 549
            +SL   E ++ DF
Sbjct: 397 TRSLVGFEVSY-DF 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,535,912
Number of Sequences: 37544
Number of extensions: 425586
Number of successful extensions: 929
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)