Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0231
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32)                 70   2e-12
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)               29   4.3  
SB_56025| Best HMM Match : Keratin_B2 (HMM E-Value=0.4)                29   5.7  
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_49623| Best HMM Match : DUF1613 (HMM E-Value=2.1)                   29   5.7  
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    29   5.7  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             28   9.9  

>SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32)
          Length = 198

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 41/104 (39%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
 Frame = +1

Query: 319 LFATNRRRLANKLKS------GQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPG 480
           +FATNRRRL  +LK       G IVVL GGE    Y TD   VFRQE++F W  GV E  
Sbjct: 1   MFATNRRRLCERLKKNEKVPKGAIVVLLGGEQNTRYCTDTDVVFRQESFFHWTFGVLEAD 60

Query: 481 CYFALDVSTASLTSLCPDFLRSMKSGWANSMACSDFKNIYAVDE 612
           C+ A++V T       P   +              +K  Y VDE
Sbjct: 61  CFGAVEVDTGKSILFIPKLPQEYAIWMGKIHPKEHYKEKYDVDE 104


>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 352 KLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTASLTSL 525
           +L    +V++ G  +     TD+ Y FRQ   F ++ G +EP     L  + A+ TSL
Sbjct: 123 ELHDKHLVIIPGNPN-QFMSTDIPYPFRQNTDFLYLTGFQEPDAVLLLGNNKATCTSL 179


>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
          Length = 600

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 478 GCYFALDVSTASLTSLCPDFLRSMKSGWANS 570
           G ++A+DVS A+ T L  + ++ +KSG A +
Sbjct: 453 GLHYAMDVSAATFTHLMDEVVKMIKSGRARN 483


>SB_56025| Best HMM Match : Keratin_B2 (HMM E-Value=0.4)
          Length = 187

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 671 LTLSGPKPQTSGLDGPRRPFFNGNLMSSMWV 763
           L+  GP P T G+DG   P+ + N     WV
Sbjct: 134 LSTEGPSPVTKGVDGALSPYGDDNDEDCEWV 164


>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 358 KSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWV 459
           K   IV  + G+D N+++  V  +FRQ     WV
Sbjct: 146 KVSPIVATESGDDENNFEQFVSAIFRQHTTQLWV 179


>SB_49623| Best HMM Match : DUF1613 (HMM E-Value=2.1)
          Length = 680

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 248 FFADHRTWQRRGLWALALLKCRYLCSQQTDED*QINSKVDK*WFCK 385
           F AD        LW+  +  CRY+CS+    +   N++ +   FCK
Sbjct: 534 FSADRGKTGHYDLWSHYVSACRYMCSRSISPEQCANAEKELLEFCK 579


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 336 SVCCEQR*RHFKSARAHRPRRCHV 265
           S+ C QR +    +RAHR +RCHV
Sbjct: 208 SITCPQR-KAVSRSRAHREKRCHV 230


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 513  TCCTNI*GKITTGFSNATNPCKIGF 439
            T CT     +T G SNAT PCK G+
Sbjct: 1246 TSCTEGYYCMTRGLSNATAPCKAGW 1270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,281,567
Number of Sequences: 59808
Number of extensions: 510640
Number of successful extensions: 1005
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)