Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0231
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    77   1e-14
U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U00035-2|AAA50644.2|  413|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 47/118 (39%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
 Frame = +1

Query: 277 TWSMGPGTLEVPLSLFATNRRRLANKLKS----GQIVVLQGGEDVNHYDTDVQYV-FRQE 441
           T+ +   T +VP+ LF  NR RL + LKS      +V+LQGG + N Y+TD   + FRQE
Sbjct: 2   TFQLSEKTFKVPVDLFTENRHRLVDALKSKVPANSVVLLQGGVEKNRYNTDAADLPFRQE 61

Query: 442 AYFTWVCGVREPGCYFALDVSTASLTSLCPDFLRSMKSGWANSMACSD-FKNIYAVDE 612
           +YF W  GV E   Y A+DV +   T+L    L    + W   +     FK  YAVDE
Sbjct: 62  SYFFWTFGVNESEFYGAIDVRSGGKTTLFAPRLDPSYAIWDGKINNEQFFKEKYAVDE 119


>U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical
           protein M03D4.4b protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 685 PRQCQQCFRHQTLEYIFYLSXHNRLHQ 605
           P +C QC  H+T  + F L+ H ++HQ
Sbjct: 122 PHECPQC--HKTFIFKFDLNRHMKIHQ 146


>U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical
           protein M03D4.4a protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 685 PRQCQQCFRHQTLEYIFYLSXHNRLHQ 605
           P +C QC  H+T  + F L+ H ++HQ
Sbjct: 171 PHECPQC--HKTFIFKFDLNRHMKIHQ 195


>U00035-2|AAA50644.2|  413|Caenorhabditis elegans Hypothetical
           protein R01H2.2 protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 400 NHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTASLTS 522
           NHY  D++Y+  +  Y T +C +  P        +T + T+
Sbjct: 278 NHYFFDIKYLSSEICYLTNICDIYSPSTTTTPTTTTPTTTT 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,212,445
Number of Sequences: 27780
Number of extensions: 394223
Number of successful extensions: 835
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)