Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0229
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.47 
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   7.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.7  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 614 QGWDDIMQKRLYENVRVRKRVRTL 685
           Q ++DI  +R+  NVR R+R ++L
Sbjct: 89  QSFEDIQHQRVMANVRERQRTQSL 112


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 466 NPALKECAGCGGKIARGSSFT 528
           NPALK     GG  A  ++FT
Sbjct: 90  NPALKALFSLGGYAAGTATFT 110


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -3

Query: 594 CPRGLDRSMCILGSRDASICLGREGGTSRD 505
           CP+G     C L   D      + GGT  D
Sbjct: 210 CPKGFQGQNCELNVDDCKPNPCQNGGTCHD 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,088
Number of Sequences: 336
Number of extensions: 3404
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)