Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0229
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      35   0.010
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   2.7  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    27   3.6  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 519 LLHALDRYWHHGCLKCTCCGQALADMGRSFYFKGGMILCKNDYTRMF 659
           ++ A  +  H  C KC  C Q L  +G  FY++ G   C  DY   F
Sbjct: 270 IISASGKKLHPQCFKCDTCSQNLEHVG--FYYREGKFYCHLDYHEQF 314


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +1

Query: 316 SGFRSNRQAGSERVEHEPALPRVRGVSSPHPSSPEASFAANGHDYPHNNN 465
           SG  +N  +G+   +H+ +   ++G++S   +S  +S  +N  +Y +NNN
Sbjct: 571 SGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNS--SSGNSNKQNYNNNNN 618


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 367 PALPRVRGVSSPHPSSPEASFAANGH 444
           PA     G++S HPS P+++ AAN H
Sbjct: 149 PATIDFVGIASCHPSFPDSADAANVH 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,827
Number of Sequences: 5004
Number of extensions: 53136
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)