Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0229
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 33 0.31
02_02_0175 - 7465951-7466019,7466410-7466492,7467126-7467289,746... 32 0.41
05_02_0015 - 5605403-5605574,5605653-5605840,5605934-5606539,560... 31 0.71
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 31 0.71
05_04_0137 + 18343106-18344686 31 1.2
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 29 2.9
11_01_0302 + 2261489-2261738,2261917-2262064,2262124-2262205,226... 29 3.8
03_06_0369 + 33425251-33425778,33425864-33426051,33426152-334262... 29 3.8
12_01_0030 + 262452-263210,263332-263575,263867-264165 29 5.0
11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701... 29 5.0
11_01_0031 + 248264-248513,248519-249007,249178-249445,249631-24... 29 5.0
05_01_0170 + 1180168-1180367,1181538-1181598,1181657-1181659,118... 28 6.6
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 6.6
10_08_0188 - 15596062-15597084,15597513-15597791 28 8.7
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/62 (30%), Positives = 23/62 (37%)
Frame = +3
Query: 522 LHALDRYWHHGCLKCTCCGQALADMGRSFYFKGGMILCKNDYTRMFGSGSACALCGQTIP 701
L + WH C +C C Q + D F G K Y F C +C Q IP
Sbjct: 571 LSCMGAVWHPECFRCHACNQPIYDY--EFSMSGNHPYHKTCYKERF--HPKCDVCKQFIP 626
Query: 702 XN 707
N
Sbjct: 627 TN 628
>02_02_0175 -
7465951-7466019,7466410-7466492,7467126-7467289,
7467385-7467640,7467830-7467935,7467962-7468007,
7468316-7468388,7468508-7468577
Length = 288
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 558 LKCTCCGQALADMGRSFYFKGGMILCKNDYTRMFGSGSACALCGQTIPXNEFR 716
+KC C + L G++ G +LC D ++ + +AC +C Q + + R
Sbjct: 1 MKCNACWRELE--GQAVSTTCGHLLCTEDAKKILSNDAACPICDQVLSKSHMR 51
>05_02_0015 -
5605403-5605574,5605653-5605840,5605934-5606539,
5606626-5607072,5607151-5607173,5607528-5607879
Length = 595
Score = 31.5 bits (68), Expect = 0.71
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +1
Query: 208 PVRRPAGHPSKHQAWTTAKRPQRTKPL-GRXXXXXXXSGFRSNR-QAGSERVEHEPALPR 381
P P GHP K A + P + +P + FR +R +A S+ + P + +
Sbjct: 367 PTTAPGGHPPKRPASAPSAPPAQDRPAQSYDVQLQYDTDFREDRTEADSKAIHEPPPMKK 426
Query: 382 VRGV-SSPHP---SSPEASFAANG 441
R SSPH PEA G
Sbjct: 427 SRKAHSSPHRITLDKPEAKGRGRG 450
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 361 HEPALPRVRGVSSPHPSSPEASFAANGHDYPHNNNNP-ALKECAGCGGKIA 510
H + G S H SP + GH +P+ N++P +E +G G +A
Sbjct: 148 HSQISGEIPGASPDHMMSPVGNIGRRGHPFPYVNHSPNPSREFSGSLGNVA 198
>05_04_0137 + 18343106-18344686
Length = 526
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 468 PGAKGMRGLWWENRERFLLHALDRYWHHGCLK 563
PG +R W+ N + + ++R W GCL+
Sbjct: 406 PGGAAVRAGWFANYSAYAMGRMERLWGEGCLE 437
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 522 LHALDRYWHHGCLKCTCCGQALADMGRSF 608
L L YWH C +C+ C + +M +F
Sbjct: 127 LSCLGMYWHPQCFRCSSCRHPIREMEVTF 155
>11_01_0302 +
2261489-2261738,2261917-2262064,2262124-2262205,
2262501-2262566,2262609-2262686,2262794-2262808,
2263618-2263764
Length = 261
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 521 PSRPRQILASRLPKMHMLRSSPRGHGKILLFQGWDDIMQKRLYENVRVRKRVRTLRANDT 700
PSR +A+R ++ M + P G G+++ G D + RL+ R+R R L+
Sbjct: 29 PSRLASGIAARWHRLRMCSTPPAGAGEVVRHPGADSLEMDRLH-----RRRHRRLKGEAR 83
Query: 701 G 703
G
Sbjct: 84 G 84
>03_06_0369 +
33425251-33425778,33425864-33426051,33426152-33426251,
33426366-33426578,33426616-33426822,33426908-33427095,
33427234-33427492
Length = 560
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 531 LDRYWHHGCLKCTCCGQALADM 596
LDRYW H ++CT C AL M
Sbjct: 473 LDRYWSH-VMQCTSCSGALKKM 493
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 566 HMLRSSPRGHGKILLFQGWDDIMQKRLYENVRVRKRVRTLRA 691
H+LRS G G+++ W+ + + E + + K++ RA
Sbjct: 167 HLLRSITDGSGRVISDADWEQLNAMMIQERLMITKKIGRKRA 208
>11_06_0247 -
21669299-21669348,21669673-21670012,21670110-21670199,
21670280-21670339,21670564-21670856,21671176-21671245,
21671623-21671970,21673188-21673318,21673418-21673901,
21674839-21675558
Length = 861
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 313 HRPPRLHALKALSFGVS*PW--SRPGASKGAPPVSEPA 206
H PPRLH L LS PW + P A + P+ PA
Sbjct: 21 HHPPRLHRLLHLSTTSPYPWLSAWPTAHRRRVPLRRPA 58
>11_01_0031 +
248264-248513,248519-249007,249178-249445,249631-249718
Length = 364
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 566 HMLRSSPRGHGKILLFQGWDDIMQKRLYENVRVRKRVRTLRA 691
H+LRS G G+++ W+ + + E + + K++ RA
Sbjct: 277 HLLRSITDGSGRVISDADWEQLNAMMIQERLMITKKIGRKRA 318
>05_01_0170 +
1180168-1180367,1181538-1181598,1181657-1181659,
1182396-1182443,1182979-1184595
Length = 642
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 349 RCQLDGWSGNRSHRPPRLHALKA 281
RC +G+SGN + RP RL L++
Sbjct: 93 RCPTEGFSGNTTKRPSRLSELES 115
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Frame = +1
Query: 208 PVRRPAGHPSKHQAWTTAKRPQ-RTKPLGRXXXXXXXSGFRSNRQAGSERVEHEPALPRV 384
P +P P + + A R + R P + S+ + S PALP
Sbjct: 105 PTMQPPVKPPEELSPVGAPRSRVRAMPPSPSLSPPAKAPSHSHAKTPSMPPAERPALPPT 164
Query: 385 RGVSSPHPSSPEASFAANGHDYPHNNNNPAL 477
+ ++ P++P AN H H+ P+L
Sbjct: 165 KAPAAISPATPPQLSPANAHSTHHHAKPPSL 195
>10_08_0188 - 15596062-15597084,15597513-15597791
Length = 433
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 349 ERVEHEPALPRVRGVSSPHPSSPEASFAANGHD 447
E+ +HE R ++ PHPS+ S + NG D
Sbjct: 314 EQEQHEEEEARSPEIADPHPSAGNKSRSGNGDD 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,471,293
Number of Sequences: 37544
Number of extensions: 434146
Number of successful extensions: 1276
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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