Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0229
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT...    31   0.78 
At1g20760.1 68414.m02600 calcium-binding EF hand family protein ...    31   1.0  
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ...    30   1.4  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    29   2.4  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    29   2.4  
At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein ...    29   4.2  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    29   4.2  
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont...    28   5.5  
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont...    28   5.5  

>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
           identical to homeobox protein knotted-1 like 1  (KNAT1)
           SP:P46639 from [Arabidopsis thaliana]
          Length = 398

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 391 VSSPHPSSPEASFAANGHDYPHNNNNPALK 480
           +SS  P + E  F ++ HD P+NNNNP++K
Sbjct: 68  MSSLLPQTTENCFRSD-HDQPNNNNNPSVK 96


>At1g20760.1 68414.m02600 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 1019

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 340 AGSERVEHEPALPRVRGVSSPHPSS--PEASFAANGHDYPHNNNNP 471
           +G++  +  PA      VSS  PSS  P  S   +GH  P  NN P
Sbjct: 305 SGNQLQQPRPAASSQPAVSSQGPSSGLPPGSAVGSGHSTPAGNNQP 350


>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
           protein / LIM domain-containing protein weak similarity
           to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
           [Mus musculus] GI:664955; contains Pfam profiles
           PF02809: Ubiquitin interaction motif, PF00412: LIM
           domain
          Length = 532

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = +3

Query: 522 LHALDRYWHHGCLKCTCCGQALADMGRSFYFKGGMILCKNDYTRMFGSGSACALCGQTIP 701
           L+ L+  WH  C +C  C Q +++    F   G     K  Y   +     C +C   IP
Sbjct: 185 LNCLNSLWHPECFRCYGCSQPISEY--EFSTSGNYPFHKACYRERY--HPKCDVCSHFIP 240

Query: 702 XN 707
            N
Sbjct: 241 TN 242


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +1

Query: 325 RSNRQAGSERVEHEPALPRVRGVSSPHPSSPEASFAANGHDYPHNNNNPALKECAGCGGK 504
           R    AG  R    P  P  +G SSP   + + S   +      N N   LKE  G  G+
Sbjct: 64  RGKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGE 123

Query: 505 I 507
           +
Sbjct: 124 V 124


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +1

Query: 325 RSNRQAGSERVEHEPALPRVRGVSSPHPSSPEASFAANGHDYPHNNNNPALKECAGCGGK 504
           R    AG  R    P  P  +G SSP   + + S   +      N N   LKE  G  G+
Sbjct: 64  RGKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGE 123

Query: 505 I 507
           +
Sbjct: 124 V 124


>At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 284

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 346 SERVEHEPALPRVRGVSSPHPSSPEASFAANGHDYPHNNNNPALKECAGCGGK 504
           S   +H P   R + V+S   SSP+++        P  N     + C  CG K
Sbjct: 33  SSSYDHSPKKKRTKTVASSSSSSPKSASKPKYTKKPDPNAPKITRPCTECGRK 85


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
           domain-containing protein similar to transcriptional
           activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 325 RSNRQAGSERVEHEPALPRVRGVSSPHPSSPEASFAANGHDYPHNNNNPALKE 483
           R +R+    + E+E  L  V  V+SP     + + A+ G D+  + NN A  E
Sbjct: 266 RVSRETSPVKDENEDNLTSVSRVTSPVKDENQDNLASVGQDHGEDKNNLAASE 318


>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Dentin matrix protein-3) (DMP- 3)
           (Swiss-Prot:P97399) [Mus musculus]
          Length = 828

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +1

Query: 349 ERVEHEPALPRVRGVSSPHPSSPEAS 426
           ERVEH P   R+  VSSP P SP +S
Sbjct: 73  ERVEHVPIKKRIFVVSSPSP-SPSSS 97


>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Dentin matrix protein-3) (DMP- 3)
           (Swiss-Prot:P97399) [Mus musculus]
          Length = 828

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +1

Query: 349 ERVEHEPALPRVRGVSSPHPSSPEAS 426
           ERVEH P   R+  VSSP P SP +S
Sbjct: 73  ERVEHVPIKKRIFVVSSPSP-SPSSS 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,168
Number of Sequences: 28952
Number of extensions: 308051
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)