Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0228
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.1
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 27 1.9
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 27 1.9
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 2.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.5
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.3
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 27 3.3
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 7.5
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 9.9
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 9.9
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 164 MCTQLLTVYSPLMGKNVTITYYKFIVAIKHLHVNTAPILR 45
+ Q++ VYSP + VT F++AI L V +PILR
Sbjct: 95 LAMQIMFVYSPNAPERVTQRIICFLLAIDVLVVFLSPILR 134
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 332 KYFMNHLSIKFSKKPFLFLIKSIYSNILLAMYTF 433
KY +N+L +K +PF S+ S +AMY F
Sbjct: 183 KYLINNLQLKCLDRPFEGDAHSLSSESFMAMYKF 216
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 495 HKVLLILNIIWKCLDTINFHYQYYKMSHIEF 587
HK + +L IW C+ ++ + YY S I F
Sbjct: 111 HKKMFVLGYIWFCIWSLISGFSYYAKSVIMF 141
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 337 FYESFEY*IFKEAIFVSYQINIFKYSFGYV--HIPNCFYALSLLKRISE*NYRIPI 498
F ESFE + + ++ N+F + FG H+ +C LL++ + NY IP+
Sbjct: 1085 FNESFEVELPCKQT-CNFVANVFDWDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPL 1139
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 143 VYSPLMGKNVTITYYKFIVAIKH 75
+Y L G V++TY KF + IKH
Sbjct: 1171 IYYKLYGNKVSLTYPKFELRIKH 1193
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = -3
Query: 364 KFNTQMIHKIF*WLYTHINAFLFV*KKTDNTYILKIACIDSLLYECMNNNHL 209
++ +Q+++K HI +F + +D+T +LKI + LL + N++ +
Sbjct: 317 RYISQIVYKTPELFKNHIKSFFLIASDSDDTCLLKINILSRLL-DAQNSSQI 367
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +2
Query: 284 FLLYEQKSIYVCI*PLKYFMNHLSIKFSKKPFLFLIKSIY----SNILLAMYTFPI 439
FL+Y QK + + + HLS S PF+ +I S Y + +L+ Y+F I
Sbjct: 692 FLMYIQKLPETFTLLIPHLLYHLSQATSTLPFVLMIVSSYQLLDNTVLMKDYSFTI 747
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +1
Query: 217 YYSYIHTIMNQYTLFLVCKCCLFSF------IRTEKHLCVYIAIKIFYESFEY*IFKEAI 378
Y S +H + Q + L C + SF I ++K V I I Y F + ++
Sbjct: 125 YCSVVHKSILQIGVTLTFICPMLSFLLCFRIIISQKAALVSIGISTLYYCFVQFMEVKSA 184
Query: 379 FVSYQINIFKY 411
+SY ++FK+
Sbjct: 185 LISYDRSLFKF 195
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 384 FLSNQYIQIFFWLCTHSQLFLCLVTIKKNIRIELSNSHKVL---LILNIIWKC 533
FL + Y+ IF W+ ++LFL T+ ++ + L S VL L+ +W C
Sbjct: 299 FLFSFYVLIFIWVRLFARLFLRGSTLVGSVWV-LPRSSWVLASFYSLHFLWLC 350
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 269 VSVVCFLLYEQKSIYVCI*PLKYFMNHLSIKFSKK 373
V VV FL+ +Y + PL+ LS+K S+K
Sbjct: 630 VGVVAFLMSIATYVYFSLVPLQSTFGKLSVKDSRK 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,840
Number of Sequences: 5004
Number of extensions: 58243
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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